RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 GABARAPL1Q9H0R8 117 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 MFSD1Q9H3U5 465 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 TUBA4BQ9H853 241 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 ZNF286AQ9HBT8 521 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 SDHAF2Q9NX18 166 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 DNAJC27Q9NZQ0 273 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 CLEC2DQ9UHP7 191 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 SLC22A14Q9Y267 594 aa0.71□□□□□ -2.3
VPS50-216ENST00000484954 AQRO60306 1485 aaKnown RBP eCLIP0.71□□□□□ -2.3
VPS50-216ENST00000484954 POLR3AO14802 1390 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 NRCAMQ92823 1304 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 SIGLEC1Q9BZZ2 1709 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 TRAV8-3A0A0A6YYJ7 113 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 IGKV2-29A2NJV5 120 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 CD300LBA8K4G0 201 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 LEUTXA8MZ59 168 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 H0YC42 278 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 K7ERS5 55 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 RGS5O15539 181 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 PDCD6O75340 191 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 ZMPSTE24O75844 475 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 PDYNP01213 254 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 SOD3P08294 240 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 CCL2P13500 99 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 GTF2F2P13984 249 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 ELK4P28324 431 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 GTF2H1P32780 548 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 ZNF140P52738 457 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 AQP5P55064 265 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 RAB38P57729 211 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 VAMP3Q15836 100 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 BCL2A1Q16548 175 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 C18orf21Q32NC0 220 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 HES3Q5TGS1 186 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 Q6ZRU5 148 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 FAM19A3Q7Z5A8 133 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 DNAAF3Q8N9W5 541 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 GATD1Q8NB37 220 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 BPIFB6Q8NFQ5 453 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 OR6K3Q8NGY3 331 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 BLNKQ8WV28 456 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 APOBEC3DQ96AK3 386 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 CIDECQ96AQ7 238 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 ZMYND19Q96E35 227 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 REEP6Q96HR9 211 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 GLT1D1Q96MS3 346 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 ZNF396Q96N95 335 aaPredicted RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 OR2M4Q96R27 311 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 SUCNR1Q9BXA5 334 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 RAB1BQ9H0U4 201 aa0.7□□□□□ -2.3
VPS50-216ENST00000484954 NXT1Q9UKK6 140 aaKnown RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 BZW2Q9Y6E2 419 aaKnown RBP0.7□□□□□ -2.3
VPS50-216ENST00000484954 ATG2BQ96BY7 2078 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 A6NED7 52 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR5H14A6NHG9 310 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 C8orf87E5RJ46 101 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 E7EWF7 191 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 TMEM250H0YL14 139 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 J3QLI3 93 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 M0QXV9 152 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 NDUFS8O00217 210 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 LECT2O14960 151 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 ENSAO43768 121 aaKnown RBP0.69□□□□□ -2.3
VPS50-216ENST00000484954 CRTAPO75718 401 aaPredicted RBP0.69□□□□□ -2.3
VPS50-216ENST00000484954 BRI3O95415 125 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 SOX14O95416 240 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OPN1SWP03999 348 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 PRTN3P24158 256 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 IL12BP29460 328 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 LCN1P31025 176 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 EVI2BP34910 448 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 XKP51811 444 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 KRTAP10-4P60372 401 aaPredicted RBP0.69□□□□□ -2.3
VPS50-216ENST00000484954 STX4Q12846 297 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 PRDX4Q13162 271 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 WDR43Q15061 677 aaKnown RBP eCLIP0.69□□□□□ -2.3
VPS50-216ENST00000484954 CEACAM21Q3KPI0 293 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 SCXQ7RTU7 201 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 LYZL2Q7Z4W2 148 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 HS3ST5Q8IZT8 346 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 SLC25A45Q8N413 288 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 KRTCAP2Q8N6L1 136 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 CDRT4Q8N9R6 151 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 ZNF738Q8NE65 137 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR4K17Q8NGC6 315 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR2Y1Q8NGV0 311 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR6K2Q8NGY2 324 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR4A5Q8NH83 315 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 TWIST2Q8WVJ9 160 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 ZNF75CPQ92670 426 aaPredicted RBP0.69□□□□□ -2.3
VPS50-216ENST00000484954 CMBLQ96DG6 245 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OLFM3Q96PB7 478 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 OR8B2Q96RD0 313 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 VAT1Q99536 393 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 PRSS27Q9BQR3 290 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 TXNDC17Q9BRA2 123 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 ANAPC13Q9BS18 74 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 SLC25A31Q9H0C2 315 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 RHOFQ9HBH0 211 aa0.69□□□□□ -2.3
VPS50-216ENST00000484954 MAT2BQ9NZL9 334 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms