RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 Q6P435 159 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 OR8H2Q8N162 312 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 OSR2Q8N2R0 312 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 CHST4Q8NCG5 386 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 LY6G5BQ8NDX9 201 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 OR6M1Q8NGM8 313 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 C8orf46Q8TAG6 207 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 SNX22Q96L94 193 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 WDFY2Q96P53 400 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 OR51E2Q9H255 320 aa9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 AK6Q9Y3D8 172 aaKnown RBP9.75□□□□□ -0.85
SQSTM1-206ENST00000466342 EPPK1P58107 5090 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 TRBV23-1A0A0A0MS06 115 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 A0A1W2PP11 408 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 SHISA3A0PJX4 238 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 SIRPB1O00241 398 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 SLC17A2O00624 439 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PDCD5O14737 125 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 SLC22A1O15245 554 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PSPNO60542 156 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 CSF1P09603 554 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 UBBP0CG47 229 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 MMP9P14780 707 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 ZNF44P15621 663 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 GABRR1P24046 479 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 HTR2CP28335 458 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PSMD7P51665 324 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 RBM11P57052 281 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PIGYQ3MUY2 71 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 TIMM50Q3ZCQ8 353 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 METTL11BQ5VVY1 283 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 LINC00596Q86U02 117 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 OR5D13Q8NGL4 314 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 LINC01006Q8NI28 216 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PPP1R35Q8TAP8 253 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 YIPF6Q96EC8 236 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 MRPS24Q96EL2 167 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 CHCHD6Q9BRQ6 235 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PCGF1Q9BSM1 259 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 MRPS26Q9BYN8 205 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 KRTAP17-1Q9BYP8 105 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 CHST6Q9GZX3 395 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 PLGRKTQ9HBL7 147 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 ST3GAL6Q9Y274 331 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 V9GY05 133 aa9.74□□□□□ -0.85
SQSTM1-206ENST00000466342 DNAH3Q8TD57 4116 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 CENPVL3A0A0U1RRI6 287 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 MDFIC2A0A1B0GVS7 189 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 SLC33A1O00400 549 aaPredicted RBP9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 DEGS1O15121 323 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 RAB3BP20337 219 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 OR3A1P47881 315 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 PROK1P58294 105 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 ARF6P62330 175 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 RPL31P62899 125 aaKnown RBP9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 SCN1BQ07699 218 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 GRK1Q15835 563 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 MPV17LQ2QL34 196 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 DEFB112Q30KQ8 113 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 BRD3OSQ6XYD6 125 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 GDPD3Q7L5L3 318 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 OR4S1Q8NGB4 309 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 ZDHHC16Q969W1 377 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 KCTD7Q96MP8 289 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 TBX15Q96SF7 602 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 SIRPDQ9H106 197 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 CST11Q9H112 138 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 IFT22Q9H7X7 185 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 TNFRSF19Q9NS68 423 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 C19orf12Q9NSK7 152 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 KPTNQ9Y664 436 aa9.73□□□□□ -0.85
SQSTM1-206ENST00000466342 LOC100506127A0A0U1RQW1 187 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 A0A1W2PQ09 198 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 MGST3O14880 152 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 GEMIN2O14893 280 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 CRTAPO75718 401 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 OR7C1O76099 320 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 BPNT1O95861 308 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 OPN1MWP04001 364 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 CSN2P05814 226 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 OPN1MW2P0DN77 364 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 OPN1MW3P0DN78 364 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 MGMTP16455 207 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 RANBP1P43487 201 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 OR10A3P58181 314 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 RPL15P61313 204 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 RAB11BQ15907 218 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 Q6YL49 198 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 GDPGP1Q6ZNW5 385 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 TPRA1Q86W33 373 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 FAM185AQ8N0U4 392 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 TMEM104Q8NE00 496 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 FAM46BQ96A09 425 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 CENPOQ9BU64 300 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 CHIAQ9BZP6 476 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 PPA2Q9H2U2 334 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 BANF2Q9H503 90 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 ONECUT1Q9UBC0 465 aa9.72□□□□□ -0.85
SQSTM1-206ENST00000466342 TRAV24A0A0B4J272 114 aa9.71□□□□□ -0.86
SQSTM1-206ENST00000466342 IGHV1-69DA0A0B4J2H0 117 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms