RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TRAV18A0A075B6X5 111 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 A0A0A6YYD4 124 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 NKX6-3A6NJ46 265 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 F8VVB4 439 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 F8VWA3 439 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 J3QLI3 93 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 HAND1O96004 215 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 HIST1H1DP16402 221 aaKnown RBP10.09□□□□□ -0.79
PTPRF-208ENST00000437607 PTBP1P26599 531 aaKnown RBP eCLIP10.09□□□□□ -0.79
PTPRF-208ENST00000437607 PMELP40967 661 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 UBA52P62987 128 aaKnown RBP10.09□□□□□ -0.79
PTPRF-208ENST00000437607 MRPS10P82664 201 aaKnown RBP10.09□□□□□ -0.79
PTPRF-208ENST00000437607 MOGAT2Q3SYC2 334 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 PYDC2Q56P42 97 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 ATAD3CQ5T2N8 411 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 SNX29P2Q8IUI4 249 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 TEX29Q8N6K0 151 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 DTX3Q8N9I9 347 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 NEK7Q8TDX7 302 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 WDR13Q9H1Z4 485 aa10.09□□□□□ -0.79
PTPRF-208ENST00000437607 OOEPA6NGQ2 149 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 C3orf80F5H4A9 247 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 TMEM178BH3BS89 294 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 RAB27BO00194 218 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 LGALS8O00214 317 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 SH2D1BO14796 132 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 TMPRSS2O15393 492 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 SOCS1O15524 211 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 TPPPO94811 219 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 ZFP36P26651 326 aaKnown RBP10.08□□□□□ -0.8
PTPRF-208ENST00000437607 CHATP28329 748 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 DUSP1P28562 367 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 RBMXP38159 391 aaKnown RBP10.08□□□□□ -0.8
PTPRF-208ENST00000437607 GNG2P59768 71 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 MRPS15P82914 257 aaKnown RBP10.08□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF146Q15072 292 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 MICBQ29980 383 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 PRR31Q5SQ13 230 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 Q6ZTK2 550 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 BPIFB2Q8N4F0 458 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 FAM89BQ8N5H3 189 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 NANPQ8TBE9 248 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 TIMD4Q96H15 378 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF747Q9BV97 191 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 PLEKHJ1Q9NW61 149 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 DCAF16Q9NXF7 216 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 PPIAL4AQ9Y536 164 aa10.08□□□□□ -0.8
PTPRF-208ENST00000437607 NOTCH1P46531 2555 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 IGHV3OR15-7A0A075B7D8 119 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 TRAV38-1A0A0B4J264 116 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 ISPDA4D126 451 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 TMEM235A6NFC5 223 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 OR2AT4A6NND4 320 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 SERPINE3A8MV23 424 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 SIRPB1O00241 398 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 MFNGO00587 321 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 HSPB6O14558 160 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 OR2H2O95918 312 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 GSTP1P09211 210 aaKnown RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 HKR1P10072 659 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 MUC1P15941 1255 aaPredicted RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 GNB3P16520 340 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 FUT3P21217 361 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 GATA3P23771 443 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 CD40LGP29965 261 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 LCN2P80188 198 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 HOXA4Q00056 320 aaPredicted RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 SCN1BQ07699 218 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 KCNJ8Q15842 424 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF79Q15937 498 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 PAN3Q58A45 887 aaKnown RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 RNASE12Q5GAN4 147 aaKnown RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 TRIQKQ629K1 86 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 GDPD1Q8N9F7 314 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 ASCC1Q8N9N2 400 aaKnown RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 RAB1CQ92928 201 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 BORCS5Q969J3 196 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 ARHGAP5-AS1Q96IT6 56 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 CCDC32Q9BV29 185 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 PECRQ9BY49 303 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 SRRQ9GZT4 340 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 C7orf69Q9H7B7 122 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 AUNIPQ9H7T9 357 aa10.07□□□□□ -0.8
PTPRF-208ENST00000437607 ZMAT3Q9HA38 289 aaKnown RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 RCC2Q9P258 522 aaKnown RBP10.07□□□□□ -0.8
PTPRF-208ENST00000437607 PPIAL4EA0A075B759 164 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 RFPL4AA6NLU0 287 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 FOXI3A8MTJ6 420 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-208ENST00000437607 MCRIP1C9JLW8 97 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PPIAL4DF5H284 164 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 RFPL4AL1F8VTS6 287 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 J3QRK9 145 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 DEGS1O15121 323 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF205O95201 554 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 LHBP01229 141 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 CD3GP09693 182 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PPIAL4FP0DN26 164 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PSG2P11465 335 aa10.06□□□□□ -0.8
PTPRF-208ENST00000437607 PRSS3P35030 304 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms