RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 CRYGSP22914 178 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 MSX1P28360 303 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 HERPUD1Q15011 391 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 KHDC3LQ587J8 217 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 LCN15Q6UWW0 184 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 FRZBQ92765 325 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 ZNF488Q96MN9 340 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 C11orf1Q9H5F2 150 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 ZNF286AQ9HBT8 521 aa18.06■□□□□ 0.48
CTCF-202ENST00000401394 HMGB3O15347 200 aaKnown RBP18.05■□□□□ 0.48
CTCF-202ENST00000401394 SYNGR3O43761 229 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 DKK1O94907 266 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 SCAF4O95104 1147 aaKnown RBP18.05■□□□□ 0.48
CTCF-202ENST00000401394 SLC34A2O95436 690 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 CD55P08174 381 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 CDX1P47902 265 aaPredicted RBP18.05■□□□□ 0.48
CTCF-202ENST00000401394 SUCLG1P53597 346 aaKnown RBP18.05■□□□□ 0.48
CTCF-202ENST00000401394 CCL7P80098 99 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 PSG4Q00888 419 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 FADS6Q8N9I5 356 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 STRAPQ9Y3F4 350 aaKnown RBP18.05■□□□□ 0.48
CTCF-202ENST00000401394 IGHV3-64DA0A0J9YX35 117 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 A0A1B0GV90 55 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 RAB11AP62491 216 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 THNSL2Q86YJ6 484 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 SELENOHQ8IZQ5 122 aaKnown RBP18.05■□□□□ 0.48
CTCF-202ENST00000401394 ZNF611Q8N823 705 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 MALSU1Q96EH3 234 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 MEGF10Q96KG7 1140 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 PRDM13Q9H4Q3 707 aa18.05■□□□□ 0.48
CTCF-202ENST00000401394 TRDCB7Z8K6 153 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 RPL23AP62750 156 aaKnown RBP18.04■□□□□ 0.48
CTCF-202ENST00000401394 HLA-BQ31612 363 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 MAML2Q8IZL2 1156 aaPredicted RBP18.04■□□□□ 0.48
CTCF-202ENST00000401394 ZNF610Q8N9Z0 462 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 TCEAL7Q9BRU2 100 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 ZNF665Q9H7R5 613 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 GAR1Q9NY12 217 aaKnown RBP18.04■□□□□ 0.48
CTCF-202ENST00000401394 FOXD3Q9UJU5 478 aaPredicted RBP18.04■□□□□ 0.48
CTCF-202ENST00000401394 WRBO00258 174 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 RAB5CP51148 216 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 C10orf128Q5T292 105 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 COMMD1Q8N668 190 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 ADPRHL1Q8NDY3 354 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 OR51H1Q8NH63 302 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 CACNA1DQ01668 2161 aa18.04■□□□□ 0.48
CTCF-202ENST00000401394 DMRTC2Q8IXT2 367 aaPredicted RBP18.03■□□□□ 0.48
CTCF-202ENST00000401394 OR1F12Q8NHA8 337 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 FGF23Q9GZV9 251 aaPredicted RBP18.03■□□□□ 0.48
CTCF-202ENST00000401394 TMEM222Q9H0R3 208 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 DCHS1Q96JQ0 3298 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 TRGC1P0CF51 173 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 TCN2P20062 427 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 BCL3P20749 454 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 MALLQ13021 153 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 C20orf204Q6ZNR8 217 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 LRTM2Q8N967 370 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 S100PBPQ96BU1 408 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 SIGLEC12Q96PQ1 595 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 SYT3Q9BQG1 590 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 IGLV3-32A0A0A0MS00 114 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 FUT3P21217 361 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 S100A2P29034 98 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 ECI1P42126 302 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 VAMP2P63027 116 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 HIST1H3AP68431 136 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 HIST2H3PS2Q5TEC6 136 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 WDR25Q64LD2 544 aaPredicted RBP18.03■□□□□ 0.48
CTCF-202ENST00000401394 OR2T2Q6IF00 324 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 ANGPTL4Q9BY76 406 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 BCO1Q9HAY6 547 aa18.03■□□□□ 0.48
CTCF-202ENST00000401394 DOCK11Q5JSL3 2073 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 IGKV1-6A0A0C4DH72 117 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 PGA5P0DJD9 388 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 EDN3P14138 238 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 DTYMKP23919 212 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 ZNF100Q8IYN0 542 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 CMTM1Q8IZ96 169 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 NECAP1Q8NC96 275 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 PLPPR1Q8TBJ4 325 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 CPNE4Q96A23 557 aaPredicted RBP18.02■□□□□ 0.48
CTCF-202ENST00000401394 SNX22Q96L94 193 aa18.02■□□□□ 0.48
CTCF-202ENST00000401394 SPENQ96T58 3664 aaKnown RBP18.02■□□□□ 0.48
CTCF-202ENST00000401394 A0A096LPE4 126 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 A0A1W2PPZ6 126 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 PDCD6O75340 191 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 OR1K1Q8NGR3 316 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 NEK7Q8TDX7 302 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 EXTL1Q92935 676 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 OR51B6Q9H340 312 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 DKKL1Q9UK85 242 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 TMED3Q9Y3Q3 217 aa18.02■□□□□ 0.47
CTCF-202ENST00000401394 ZNF729A6NN14 1252 aaPredicted RBP18.01■□□□□ 0.47
CTCF-202ENST00000401394 IFNL4K9M1U5 179 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 GALR2O43603 387 aaPredicted RBP18.01■□□□□ 0.47
CTCF-202ENST00000401394 RFPL3SP0C7P2 107 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 PAX9P55771 341 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 RPS16P62249 146 aaKnown RBP18.01■□□□□ 0.47
CTCF-202ENST00000401394 FAM27BQ5VT28 67 aa18.01■□□□□ 0.47
CTCF-202ENST00000401394 Q6ZRM9 215 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms