RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KIAA1549LQ6ZVL6 1849 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 OR5H14A6NHG9 310 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 ZNF736B4DX44 427 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 PLAUP00749 431 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 PMP2P02689 132 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 TFF1P04155 84 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 PRF1P14222 555 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 CBR1P16152 277 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 RPS11P62280 158 aaKnown RBP eCLIP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 RPS4XP62701 263 aaKnown RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 GABRA6Q16445 453 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 TIMM23BQ5SRD1 257 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 STX12Q86Y82 276 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 RNASE6Q93091 150 aaKnown RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 DMRTA2Q96SC8 542 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 PCGF1Q9BSM1 259 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 FN3KRPQ9HA64 309 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 SH2D2AQ9NP31 389 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 C14orf166Q9Y224 244 aaKnown RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 UBE2J1Q9Y385 318 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 FAM96BQ9Y3D0 163 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 BCL2L11O43521 198 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 LYPD3O95274 346 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 MECP2P51608 486 aaKnown RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 ENDOGQ14249 297 aaKnown RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 C6orf201Q7Z4U5 140 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 OR4D10Q8NGI6 311 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 CCL13Q99616 98 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 CRIM1Q9NZV1 1036 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 CFAP46Q8IYW2 2715 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 EML6Q6ZMW3 1958 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 TMEM218A2RU14 115 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 OR4C45A6NMZ5 311 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 SH2D1BO14796 132 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 MPPED1O15442 326 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 TUSC2O75896 110 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 NXPH3O95157 252 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 IFNA4P05014 189 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 S100A10P60903 97 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 RAB5BP61020 215 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 SMCO1Q147U7 214 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 C4orf17Q53FE4 359 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 PAQR4Q8N4S7 273 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 ST6GALNAC3Q8NDV1 305 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 OR56B1Q8NGI3 324 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 FOXRED1Q96CU9 486 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 FAAP24Q9BTP7 215 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 SLC17A5Q9NRA2 495 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 STEAP1Q9UHE8 339 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 FAM215AQ9Y5M1 114 aa8.87□□□□□ -0.99
COL6A3-205ENST00000392004 KLF2Q9Y5W3 355 aaPredicted RBP8.87□□□□□ -0.99
COL6A3-205ENST00000392004 IGLV3-32A0A0A0MS00 114 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 RAB19A4D1S5 217 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 CD3DP04234 171 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 NTF4P34130 210 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 GPR6P46095 362 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-205ENST00000392004 FUT6P51993 359 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 PHLDA2Q53GA4 152 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 AKIRIN2Q53H80 203 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 IGFL3Q6UXB1 125 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 LINC00114Q6XXX2 140 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 LRRTM1Q86UE6 522 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 KCNRGQ8N5I3 272 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 OR51H1Q8NH63 302 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 C2CD4CQ8TF44 421 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 NRGNQ92686 78 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 RAB1CQ92928 201 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 PHYHIPLQ96FC7 376 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 SEC22AQ96IW7 307 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 CNTD2Q9H8S5 307 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 USP34Q70CQ2 3546 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 TNFSF12O43508 249 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 NDUFB3O43676 98 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 GYPAP02724 150 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 OR4E1P0C645 316 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 SRP14P37108 136 aaKnown RBP8.86□□□□□ -0.99
COL6A3-205ENST00000392004 MPV17P39210 176 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 TAS2R19P59542 299 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 GUCA2AQ02747 115 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 SMIM21Q3B7S5 101 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 CBLN2Q8IUK8 224 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 PUSL1Q8N0Z8 303 aaKnown RBP8.86□□□□□ -0.99
COL6A3-205ENST00000392004 OR1S2Q8NGQ3 325 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 STOML3Q8TAV4 291 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 ZNF75AQ96N20 296 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 BCO1Q9HAY6 547 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 IL18BPO95998 194 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 PIGYQ3MUY2 71 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 CLEC2AQ6UVW9 174 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 ACOT7LQ6ZUV0 252 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 SSX9Q7RTT3 188 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 TMEM123Q8N131 208 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 PP6455Q8WZ26 134 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 BCL2L2Q92843 193 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-205ENST00000392004 CCL19Q99731 98 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 SLC25A21Q9BQT8 299 aaPredicted RBP8.86□□□□□ -0.99
COL6A3-205ENST00000392004 WDR13Q9H1Z4 485 aa8.86□□□□□ -0.99
COL6A3-205ENST00000392004 C10orf142B7Z368 130 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 TK1P04183 234 aa8.85□□□□□ -0.99
COL6A3-205ENST00000392004 PTGFRP43088 359 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms