RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 VSIG8P0DPA2 414 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 CD37P11049 281 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 HTR2CP28335 458 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 UBE2E1P51965 193 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 GUCA2AQ02747 115 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 P2RY14Q15391 338 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 NCR3LG1Q68D85 454 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 SLC25A28Q96A46 364 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 IFT22Q9H7X7 185 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 KIF25Q9UIL4 384 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 DSCAML1Q8TD84 2053 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 MEIKINA0A087WXM9 373 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 TRGV10A0A0A0MS01 117 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 TRAV39A0A0B4J263 110 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 hCG_1809904A0A1W2PP81 198 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 A0A1W2PPE2 198 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 A0A1W2PR64 198 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 A0A1W2PRV1 198 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 MEIOCA2RUB1 952 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 FUOMA2VDF0 154 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 HOXA3O43365 443 aaPredicted RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 TNFAIP8O95379 198 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 IGHV1-8P0DP01 117 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 SAA4P35542 130 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 GDNFP39905 211 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 CLDN12P56749 244 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 OR10A3P58181 314 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 UBA52P62987 128 aaKnown RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 MPV17LQ2QL34 196 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 SYT6Q5T7P8 510 aaPredicted RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 PRAMEF5Q5TYX0 476 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 RSBN1Q5VWQ0 802 aaPredicted RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 BAIAP2L2Q6UXY1 529 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 LINC00596Q86U02 117 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 TSPAN14Q8NG11 270 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 OR6M1Q8NGM8 313 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 OR13A1Q8NGR1 328 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 NEK7Q8TDX7 302 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 C17orf50Q8WW18 174 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 TMEM158Q8WZ71 300 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 ZDHHC16Q969W1 377 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 MRPS24Q96EL2 167 aaKnown RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 Q96M66 194 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 JMJD8Q96S16 334 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 OR51E2Q9H255 320 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 PLGRKTQ9HBL7 147 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 TNFRSF19Q9NS68 423 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 GHRLQ9UBU3 117 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 STUB1Q9UNE7 303 aa10.9□□□□□ -0.66
VPS28-202ENST00000377348 UBE2J1Q9Y385 318 aaPredicted RBP10.9□□□□□ -0.66
VPS28-202ENST00000377348 SMIM30A4D0T7 59 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 SLC17A2O00624 439 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 CLPXO76031 633 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 UBBP0CG47 229 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 OMGP23515 440 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 PAX6P26367 422 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 GLP1RP43220 463 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 UNC119Q13432 240 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 SLC9A3R2Q15599 337 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 KIAA2026Q5HYC2 2103 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 HES5Q5TA89 166 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 SIGIRRQ6IA17 410 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 CORO2AQ92828 525 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 C19orf24Q9BVV8 132 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 BARHL1Q9BZE3 327 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 CST11Q9H112 138 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 PRDM13Q9H4Q3 707 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 ZNF696Q9H7X3 374 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 HEXA-AS1Q9H8Q6 139 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 TXNL4BQ9NX01 149 aaKnown RBP10.89□□□□□ -0.67
VPS28-202ENST00000377348 RCC2Q9P258 522 aaKnown RBP10.89□□□□□ -0.67
VPS28-202ENST00000377348 V9GY05 133 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 STAB1Q9NY15 2570 aa10.89□□□□□ -0.67
VPS28-202ENST00000377348 A0A087WXM4 84 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 TRAV1-2A0A0B4J238 106 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 FAM172BPA6NC97 362 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 TMEM14DPA8MWL7 114 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 TRIM77I1YAP6 450 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 BPNT1O95861 308 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 RBP4P02753 201 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 MELTFP08582 738 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 GALP22466 123 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 MYL9P24844 172 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 CDK2P24941 298 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 KCNJ3P48549 501 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 RPS27AP62979 156 aaKnown RBP10.88□□□□□ -0.67
VPS28-202ENST00000377348 QRFPP83859 136 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 RAB11BQ15907 218 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 C17orf58Q2M2W7 97 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 RAB12Q6IQ22 244 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 Q6YL49 198 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 NR2C2APQ86WQ0 139 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 OR51D1Q8NGF3 324 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 MRGPRDQ8TDS7 321 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 DYRK2Q92630 601 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 AJUBAQ96IF1 538 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 CHCHD6Q9BRQ6 235 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 NICN1Q9BSH3 213 aa10.88□□□□□ -0.67
VPS28-202ENST00000377348 TMEM59Q9BXS4 323 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms