RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RSU1Q15404 277 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 PDLIM3Q53GG5 364 aaPredicted RBP17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 PAN3Q58A45 887 aaKnown RBP17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 OR10K1Q8NGX5 313 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 OR52N1Q8NH53 320 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 FAM192AQ9GZU8 254 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF286AQ9HBT8 521 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 TMEM138Q9NPI0 162 aa17.43■□□□□ 0.38
CCDC28B-201ENST00000373602 LEUTXA8MZ59 168 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 OR3A4PP47883 348 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 PPP3R1P63098 170 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 RCN1Q15293 331 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 HIST2H2BDQ6DRA6 164 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 DMKNQ6E0U4 476 aaPredicted RBP17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF485Q8NCK3 441 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 GGHQ92820 318 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 CHCHD3Q9NX63 227 aaKnown RBP17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 KIF25Q9UIL4 384 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 HSPE1-MOB4S4R3N1 261 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 VWFP04275 2813 aa17.42■□□□□ 0.38
CCDC28B-201ENST00000373602 TRBV5-5A0A0J9YX44 114 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 KBTBD11-OT1A0A1B0GTJ5 212 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 H3BUI4 141 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 HSPB6O14558 160 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 HTR3BO95264 441 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF93P35789 620 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 KCNJ3P48549 501 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 BLCAPP62952 87 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 PAX5Q02548 391 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 MED21Q13503 144 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 HLA-DRB5Q30154 266 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 PIGYQ3MUY2 71 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 DDI2Q5TDH0 399 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 Q6ZS46 218 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 ZNF565Q8N9K5 539 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 OR13C5Q8NGS8 318 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 WIPF2Q8TF74 440 aaPredicted RBP17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 GHSRQ92847 366 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 CREB3L1Q96BA8 519 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 BARHL1Q9BZE3 327 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 IL36GQ9NZH8 169 aa17.41■□□□□ 0.38
CCDC28B-201ENST00000373602 MEIKINA0A087WXM9 373 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 TOR1AO14656 332 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 CDRT1O95170 752 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 IGFBP3P17936 291 aaPredicted RBP17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 BDKRB2P30411 391 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 BRS3P32247 399 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 GLP1RP43220 463 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 PRRX1P54821 245 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 ST3GAL4Q11206 333 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 NHLRC3Q5JS37 347 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 UTF1Q5T230 341 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 RSBN1Q5VWQ0 802 aaPredicted RBP17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 OR13A1Q8NGR1 328 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 ORAI1Q96D31 301 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 KIRREL1Q96J84 757 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 METTL9Q9H1A3 318 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 LINC00574Q9H8X3 128 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 ING4Q9UNL4 249 aa17.4■□□□□ 0.38
CCDC28B-201ENST00000373602 LY6LH3BQJ8 138 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 BUB1B-PAK6H3BSN5 160 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 GPX5O75715 221 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 C21orf33P30042 268 aaPredicted RBP17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 CAPGP40121 348 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 CEACAM3P40198 252 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 RPS11P62280 158 aaKnown RBP eCLIP17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 RIPK1Q13546 671 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 Q499Y3 187 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 YIF1BQ5BJH7 314 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 C16orf82Q7Z2V1 217 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 PLPPR1Q8TBJ4 325 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 PGLYRP3Q96LB9 341 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 WNT10AQ9GZT5 417 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 IFT22Q9H7X7 185 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 CALYQ9NYX4 217 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 ST3GAL6Q9Y274 331 aa17.39■□□□□ 0.37
CCDC28B-201ENST00000373602 FBXO24O75426 580 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 CD24P25063 80 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 NFYBP25208 207 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 ARHGDIBP52566 201 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 TPTE2P1Q5T6R2 138 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 OGFRL1Q5TC84 451 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 LAIR2Q6ISS4 152 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 C8orf59Q8N0T1 100 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 OSR2Q8N2R0 312 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 ZFP41Q8N8Y5 198 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 SUMF2Q8NBJ7 301 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 OR9G1Q8NH87 305 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 DPCDQ9BVM2 203 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 LIN7BQ9HAP6 207 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 PAK1IP1Q9NWT1 392 aaPredicted RBP17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 IDI2-AS1Q9NZ38 188 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 CNOT2Q9NZN8 540 aaKnown RBP17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 ZNF581Q9P0T4 197 aa17.38■□□□□ 0.37
CCDC28B-201ENST00000373602 EFCAB10A6NFE3 127 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 OOSP1A8MZH6 123 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 NPIPB11E5RHQ5 1161 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 CASQ2O14958 399 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 IL1AP01583 271 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms