RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DPF3Q92784 378 aa21.11■□□□□ 0.97
CLN3-264ENST00000637985 LAS1LQ9Y4W2 734 aaKnown RBP21.11■□□□□ 0.97
CLN3-264ENST00000637985 CTSWP56202 376 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 DUSP27Q5VZP5 1158 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 TTLL11Q8NHH1 800 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 OPTNQ96CV9 577 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 PHAXQ9H814 394 aaKnown RBP21.1■□□□□ 0.97
CLN3-264ENST00000637985 ZFYVE28Q9HCC9 887 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 PCDHAC2Q9Y5I4 1007 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 SPEF2Q9C093 1822 aa21.1■□□□□ 0.97
CLN3-264ENST00000637985 KLRK1P26718 216 aa21.09■□□□□ 0.97
CLN3-264ENST00000637985 TAF1CQ15572 869 aaPredicted RBP21.09■□□□□ 0.97
CLN3-264ENST00000637985 BRI3BPQ8WY22 251 aa21.09■□□□□ 0.97
CLN3-264ENST00000637985 SHISA4Q96DD7 197 aa21.09■□□□□ 0.97
CLN3-264ENST00000637985 GREM2Q9H772 168 aa21.09■□□□□ 0.97
CLN3-264ENST00000637985 LAMA3Q16787 3333 aa21.09■□□□□ 0.97
CLN3-264ENST00000637985 CERS5Q8N5B7 392 aa21.08■□□□□ 0.97
CLN3-264ENST00000637985 ELP3Q9H9T3 547 aa21.08■□□□□ 0.97
CLN3-264ENST00000637985 OTOFQ9HC10 1997 aa21.07■□□□□ 0.96
CLN3-264ENST00000637985 CLRN2A0PK11 232 aa21.07■□□□□ 0.96
CLN3-264ENST00000637985 SPDYE2BA6NHP3 402 aa21.07■□□□□ 0.96
CLN3-264ENST00000637985 MYO1BO43795 1136 aa21.07■□□□□ 0.96
CLN3-264ENST00000637985 SPDYE6P0CI01 402 aa21.07■□□□□ 0.96
CLN3-264ENST00000637985 PRMT6Q96LA8 375 aaPredicted RBP21.07■□□□□ 0.96
CLN3-264ENST00000637985 TRIM35Q9UPQ4 493 aa21.07■□□□□ 0.96
CLN3-264ENST00000637985 RASA3Q14644 834 aa21.06■□□□□ 0.96
CLN3-264ENST00000637985 UBE2Q1Q7Z7E8 422 aa21.06■□□□□ 0.96
CLN3-264ENST00000637985 METTL22Q9BUU2 404 aaPredicted RBP21.06■□□□□ 0.96
CLN3-264ENST00000637985 ARHGAP39Q9C0H5 1083 aa21.06■□□□□ 0.96
CLN3-264ENST00000637985 CD209Q9NNX6 404 aa21.06■□□□□ 0.96
CLN3-264ENST00000637985 AOX1Q06278 1338 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 CCL15-CCL14A0A0B4J2E2 113 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 MNX1P50219 401 aaPredicted RBP21.05■□□□□ 0.96
CLN3-264ENST00000637985 NEUROD2Q15784 382 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 CCL15Q16663 113 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 CFAP100Q494V2 611 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 FAM43AQ8N2R8 423 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 VEZTQ9HBM0 779 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 MYH3P11055 1940 aa21.05■□□□□ 0.96
CLN3-264ENST00000637985 ZSWIM8A7E2V4 1837 aa21.04■□□□□ 0.96
CLN3-264ENST00000637985 GNRH1P01148 92 aa21.04■□□□□ 0.96
CLN3-264ENST00000637985 GTF2A2P52657 109 aa21.04■□□□□ 0.96
CLN3-264ENST00000637985 LACTBP83111 547 aaPredicted RBP21.04■□□□□ 0.96
CLN3-264ENST00000637985 MTFR1Q15390 333 aa21.04■□□□□ 0.96
CLN3-264ENST00000637985 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.04■□□□□ 0.96
CLN3-264ENST00000637985 CNKSR2Q8WXI2 1034 aa21.04■□□□□ 0.96
CLN3-264ENST00000637985 ANKRD2Q9GZV1 360 aa21.04■□□□□ 0.96
CLN3-264ENST00000637985 TLR2O60603 784 aa21.03■□□□□ 0.96
CLN3-264ENST00000637985 PRMT2P55345 433 aa21.03■□□□□ 0.96
CLN3-264ENST00000637985 HTATIP2Q9BUP3 242 aa21.03■□□□□ 0.96
CLN3-264ENST00000637985 A0A1W2PPC1 479 aa21.02■□□□□ 0.96
CLN3-264ENST00000637985 IGHMBP2P38935 993 aaKnown RBP21.02■□□□□ 0.96
CLN3-264ENST00000637985 KIF22Q14807 665 aa21.02■□□□□ 0.96
CLN3-264ENST00000637985 NKX2-3Q8TAU0 364 aa21.02■□□□□ 0.96
CLN3-264ENST00000637985 F8W031 263 aaPredicted RBP21.01■□□□□ 0.95
CLN3-264ENST00000637985 SOX1O00570 391 aaPredicted RBP21.01■□□□□ 0.95
CLN3-264ENST00000637985 NR2E3Q9Y5X4 410 aa21.01■□□□□ 0.95
CLN3-264ENST00000637985 IRS2Q9Y4H2 1338 aa21.01■□□□□ 0.95
CLN3-264ENST00000637985 ZBTB7BO15156 539 aaPredicted RBP21■□□□□ 0.95
CLN3-264ENST00000637985 GJA8P48165 433 aa21■□□□□ 0.95
CLN3-264ENST00000637985 FKBP1AP62942 108 aaKnown RBP21■□□□□ 0.95
CLN3-264ENST00000637985 VGLL4Q14135 290 aa21■□□□□ 0.95
CLN3-264ENST00000637985 MBIPQ9NS73 344 aa21■□□□□ 0.95
CLN3-264ENST00000637985 WDHD1O75717 1129 aaPredicted RBP20.99■□□□□ 0.95
CLN3-264ENST00000637985 IGKV5-2P06315 115 aa20.99■□□□□ 0.95
CLN3-264ENST00000637985 ZEB1P37275 1124 aaPredicted RBP20.99■□□□□ 0.95
CLN3-264ENST00000637985 MAP3K9P80192 1104 aa20.99■□□□□ 0.95
CLN3-264ENST00000637985 WDR43Q15061 677 aaKnown RBP eCLIP20.99■□□□□ 0.95
CLN3-264ENST00000637985 TEPSINQ96N21 525 aa20.99■□□□□ 0.95
CLN3-264ENST00000637985 PRKRIP1Q9H875 184 aaPredicted RBP20.99■□□□□ 0.95
CLN3-264ENST00000637985 ZCCHC17Q9NP64 241 aaKnown RBP20.99■□□□□ 0.95
CLN3-264ENST00000637985 DDX58O95786 925 aaKnown RBP20.98■□□□□ 0.95
CLN3-264ENST00000637985 GJB1P08034 283 aa20.98■□□□□ 0.95
CLN3-264ENST00000637985 KCNJ4P48050 445 aa20.98■□□□□ 0.95
CLN3-264ENST00000637985 TNFAIP1Q13829 316 aa20.98■□□□□ 0.95
CLN3-264ENST00000637985 C15orf52Q6ZUT6 534 aaKnown RBP20.98■□□□□ 0.95
CLN3-264ENST00000637985 CCDC146Q8IYE0 955 aa20.98■□□□□ 0.95
CLN3-264ENST00000637985 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.98■□□□□ 0.95
CLN3-264ENST00000637985 LRCH3Q96II8 777 aa20.98■□□□□ 0.95
CLN3-264ENST00000637985 MAP3K2Q9Y2U5 619 aa20.98■□□□□ 0.95
CLN3-264ENST00000637985 IL1R1P14778 569 aa20.97■□□□□ 0.95
CLN3-264ENST00000637985 SPDYE2Q495Y8 402 aa20.97■□□□□ 0.95
CLN3-264ENST00000637985 CDAN1Q8IWY9 1227 aa20.97■□□□□ 0.95
CLN3-264ENST00000637985 RUNDC1Q96C34 613 aa20.97■□□□□ 0.95
CLN3-264ENST00000637985 ITGA6P23229 1130 aa20.96■□□□□ 0.95
CLN3-264ENST00000637985 CTGFP29279 349 aa20.96■□□□□ 0.95
CLN3-264ENST00000637985 RBM5P52756 815 aaKnown RBP eCLIP20.96■□□□□ 0.95
CLN3-264ENST00000637985 CHRNDQ07001 517 aa20.96■□□□□ 0.95
CLN3-264ENST00000637985 MPHOSPH8Q99549 860 aa20.96■□□□□ 0.95
CLN3-264ENST00000637985 ZNF70Q9UC06 446 aaPredicted RBP20.96■□□□□ 0.95
CLN3-264ENST00000637985 SRRDQ9UH36 339 aa20.96■□□□□ 0.95
CLN3-264ENST00000637985 SPDYE5A6NIY4 337 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 BTBD19C9JJ37 291 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 SNAP23O00161 211 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 ZNF853P0CG23 659 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 CETPP11597 493 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 GRK4P32298 578 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 CSADQ9Y600 493 aa20.95■□□□□ 0.94
CLN3-264ENST00000637985 H7C1W4 665 aa20.94■□□□□ 0.94
CLN3-264ENST00000637985 ELL2O00472 640 aaPredicted RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms