RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 ARHGAP27Q6ZUM4 889 aa17.97■□□□□ 0.47
LIMS3-206ENST00000631420 KCNQ5Q9NR82 932 aa17.97■□□□□ 0.47
LIMS3-206ENST00000631420 DENND2AQ9ULE3 1009 aa17.97■□□□□ 0.47
LIMS3-206ENST00000631420 COL1A1P02452 1464 aaPredicted RBP17.97■□□□□ 0.47
LIMS3-206ENST00000631420 G3V3G9 751 aa17.96■□□□□ 0.47
LIMS3-206ENST00000631420 DCAF8Q5TAQ9 597 aa17.96■□□□□ 0.47
LIMS3-206ENST00000631420 CNTROBQ8N137 903 aa17.96■□□□□ 0.47
LIMS3-206ENST00000631420 PIH1D3Q9NQM4 214 aaKnown RBP17.96■□□□□ 0.47
LIMS3-206ENST00000631420 SEMA3EO15041 775 aa17.96■□□□□ 0.46
LIMS3-206ENST00000631420 IARSP41252 1262 aaKnown RBP17.96■□□□□ 0.46
LIMS3-206ENST00000631420 LARGE2Q8N3Y3 721 aa17.96■□□□□ 0.46
LIMS3-206ENST00000631420 EVI5LQ96CN4 794 aa17.96■□□□□ 0.46
LIMS3-206ENST00000631420 ECE2O60344 883 aa17.95■□□□□ 0.46
LIMS3-206ENST00000631420 CHGBP05060 677 aa17.95■□□□□ 0.46
LIMS3-206ENST00000631420 ZBTB22O15209 634 aa17.94■□□□□ 0.46
LIMS3-206ENST00000631420 GTF2IP78347 998 aa17.94■□□□□ 0.46
LIMS3-206ENST00000631420 PODNQ7Z5L7 613 aa17.94■□□□□ 0.46
LIMS3-206ENST00000631420 VPS33BQ9H267 617 aa17.94■□□□□ 0.46
LIMS3-206ENST00000631420 LTBP3Q9NS15 1303 aa17.93■□□□□ 0.46
LIMS3-206ENST00000631420 YDJCA8MPS7 323 aa17.93■□□□□ 0.46
LIMS3-206ENST00000631420 KBTBD3Q8NAB2 608 aa17.93■□□□□ 0.46
LIMS3-206ENST00000631420 FSD1Q9BTV5 496 aa17.93■□□□□ 0.46
LIMS3-206ENST00000631420 COL4A5P29400 1685 aa17.93■□□□□ 0.46
LIMS3-206ENST00000631420 GPR162Q16538 588 aa17.92■□□□□ 0.46
LIMS3-206ENST00000631420 SLFNL1Q499Z3 407 aa17.92■□□□□ 0.46
LIMS3-206ENST00000631420 ABCF2Q9UG63 623 aa17.92■□□□□ 0.46
LIMS3-206ENST00000631420 AKAP11Q9UKA4 1901 aa17.92■□□□□ 0.46
LIMS3-206ENST00000631420 GRIK5Q16478 980 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 TTLL5Q6EMB2 1281 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 FBXW7Q969H0 707 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 MXD3Q9BW11 206 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 FER1L6Q2WGJ9 1857 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 PDS5AQ29RF7 1337 aaKnown RBP17.91■□□□□ 0.46
LIMS3-206ENST00000631420 FAM205AQ6ZU69 1335 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 IDH1O75874 414 aaKnown RBP17.91■□□□□ 0.46
LIMS3-206ENST00000631420 TTF1Q15361 905 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-206ENST00000631420 C8orf34Q49A92 452 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 WDR66Q8TBY9 1149 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 ARFGEF1Q9Y6D6 1849 aa17.91■□□□□ 0.46
LIMS3-206ENST00000631420 UTRNP46939 3433 aa17.9■□□□□ 0.46
LIMS3-206ENST00000631420 CHMLP26374 656 aa17.9■□□□□ 0.46
LIMS3-206ENST00000631420 NIM1KQ8IY84 436 aa17.9■□□□□ 0.46
LIMS3-206ENST00000631420 LRP2BPQ9P2M1 347 aa17.9■□□□□ 0.46
LIMS3-206ENST00000631420 CDC45O75419 566 aa17.89■□□□□ 0.45
LIMS3-206ENST00000631420 PRDX5P30044 214 aa17.89■□□□□ 0.45
LIMS3-206ENST00000631420 ZNRF3Q9ULT6 936 aa17.89■□□□□ 0.45
LIMS3-206ENST00000631420 SALL1Q9NSC2 1324 aa17.89■□□□□ 0.45
LIMS3-206ENST00000631420 RAD17O75943 681 aa17.88■□□□□ 0.45
LIMS3-206ENST00000631420 MFSD14BQ5SR56 506 aa17.88■□□□□ 0.45
LIMS3-206ENST00000631420 CERS5Q8N5B7 392 aa17.88■□□□□ 0.45
LIMS3-206ENST00000631420 JDP2Q8WYK2 163 aa17.88■□□□□ 0.45
LIMS3-206ENST00000631420 RAI14Q9P0K7 980 aa17.88■□□□□ 0.45
LIMS3-206ENST00000631420 CHD4Q14839 1912 aa17.88■□□□□ 0.45
LIMS3-206ENST00000631420 USP17L3A6NCW0 530 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 USP17L4A6NCW7 530 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 DACT2Q5SW24 774 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 SLC9C2Q5TAH2 1124 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 STRIP1Q5VSL9 837 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 ERICH6Q7L0X2 663 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 USP17L1Q7RTZ2 530 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 FAM227BQ96M60 508 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 RNF113AO15541 343 aaKnown RBP17.87■□□□□ 0.45
LIMS3-206ENST00000631420 LMNB1P20700 586 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 MAP3K12Q12852 859 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 NMIQ13287 307 aaPredicted RBP17.87■□□□□ 0.45
LIMS3-206ENST00000631420 CWC27Q6UX04 472 aaKnown RBP17.87■□□□□ 0.45
LIMS3-206ENST00000631420 MAGEB6Q8N7X4 407 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 ZNF384Q8TF68 577 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 SEC62Q99442 399 aaKnown RBP17.87■□□□□ 0.45
LIMS3-206ENST00000631420 IL25Q9H293 177 aa17.87■□□□□ 0.45
LIMS3-206ENST00000631420 PSMD14O00487 310 aa17.86■□□□□ 0.45
LIMS3-206ENST00000631420 PDE6AP16499 860 aa17.86■□□□□ 0.45
LIMS3-206ENST00000631420 ADD2P35612 726 aa17.86■□□□□ 0.45
LIMS3-206ENST00000631420 CXCL9Q07325 125 aa17.86■□□□□ 0.45
LIMS3-206ENST00000631420 ZGPATQ8N5A5 531 aaKnown RBP17.86■□□□□ 0.45
LIMS3-206ENST00000631420 TBC1D22AQ8WUA7 517 aa17.86■□□□□ 0.45
LIMS3-206ENST00000631420 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.86■□□□□ 0.45
LIMS3-206ENST00000631420 DIAPH3Q9NSV4 1193 aa17.86■□□□□ 0.45
LIMS3-206ENST00000631420 A0A0D9SFI3 127 aa17.85■□□□□ 0.45
LIMS3-206ENST00000631420 TCRBV5S4A2TA0A5A2 114 aa17.85■□□□□ 0.45
LIMS3-206ENST00000631420 SEC24BO95487 1268 aa17.85■□□□□ 0.45
LIMS3-206ENST00000631420 LDHBP07195 334 aaKnown RBP17.85■□□□□ 0.45
LIMS3-206ENST00000631420 MECOMQ03112 1051 aa17.85■□□□□ 0.45
LIMS3-206ENST00000631420 SPTY2D1Q68D10 685 aaPredicted RBP17.85■□□□□ 0.45
LIMS3-206ENST00000631420 NSUN4Q96CB9 384 aaKnown RBP17.85■□□□□ 0.45
LIMS3-206ENST00000631420 ZNF532Q9HCE3 1301 aa17.85■□□□□ 0.45
LIMS3-206ENST00000631420 F8W031 263 aaPredicted RBP17.84■□□□□ 0.45
LIMS3-206ENST00000631420 FZD9O00144 591 aa17.84■□□□□ 0.45
LIMS3-206ENST00000631420 GRIN3BO60391 1043 aa17.84■□□□□ 0.45
LIMS3-206ENST00000631420 SCN9AQ15858 1988 aa17.84■□□□□ 0.45
LIMS3-206ENST00000631420 HIP1O00291 1037 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 VIL1P09327 827 aaKnown RBP17.83■□□□□ 0.45
LIMS3-206ENST00000631420 CYP7A1P22680 504 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 ZMYM1Q5SVZ6 1142 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 CIAPIN1Q6FI81 312 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 ZSCAN25Q6NSZ9 544 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 ADGRA1Q86SQ6 560 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 OSBP2Q969R2 916 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 BACH2Q9BYV9 841 aa17.83■□□□□ 0.45
LIMS3-206ENST00000631420 RNF181Q9P0P0 153 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms