RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZSCAN25Q6NSZ9 544 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 KIF6Q6ZMV9 814 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 C11orf57Q6ZUT1 292 aaPredicted RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 ZNF512BQ96KM6 892 aaPredicted RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 TMOD3Q9NYL9 352 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 HPS5Q9UPZ3 1129 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 PRC1O43663 620 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 DHX16O60231 1041 aaKnown RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 KINO60870 393 aaKnown RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 MRFAP1L1Q96HT8 127 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 GPHNQ9NQX3 736 aaPredicted RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 NAP1L2Q9ULW6 460 aaPredicted RBP14.93□□□□□ -0.02
LINC00540-203ENST00000631321 RIPOR2Q9Y4F9 1068 aa14.93□□□□□ -0.02
LINC00540-203ENST00000631321 TOGARAM1Q9Y4F4 1720 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 ANTXR2P58335 489 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 ADALQ6DHV7 355 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 FMR1NBQ8N0W7 255 aaPredicted RBP14.92□□□□□ -0.02
LINC00540-203ENST00000631321 FSIP1Q8NA03 581 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 FAM89AQ96GI7 184 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 PUS7LQ9H0K6 701 aaKnown RBP14.92□□□□□ -0.02
LINC00540-203ENST00000631321 ANO10Q9NW15 660 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 CLIP2Q9UDT6 1046 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 NRBP1Q9UHY1 535 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 XIRP1Q702N8 1843 aaKnown RBP14.92□□□□□ -0.02
LINC00540-203ENST00000631321 ME1P48163 572 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 GUCY1B3Q02153 619 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 DRC7Q8IY82 874 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 LINC00301Q8NCQ3 95 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 NCOA7Q8NI08 942 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 MRPS27Q92552 414 aaKnown RBP14.92□□□□□ -0.02
LINC00540-203ENST00000631321 PCDHA7Q9UN72 937 aa14.92□□□□□ -0.02
LINC00540-203ENST00000631321 MAP3K15Q6ZN16 1313 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 ATRNO75882 1429 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 GOLGA6L19H0YKK7 550 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 YEATS4O95619 227 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 ATP2B3Q16720 1220 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 TAF7LQ5H9L4 462 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 GIGYF2Q6Y7W6 1299 aaKnown RBP14.91□□□□□ -0.02
LINC00540-203ENST00000631321 BRAPQ7Z569 592 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 DNAJC10Q8IXB1 793 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 FBXO18Q8NFZ0 1043 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 POLR3EQ9NVU0 708 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 KLF18A0A0U1RQI7 1052 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 GPAA1O43292 621 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 HAND2P61296 217 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 LRMPQ12912 555 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 CHAF1AQ13111 956 aaPredicted RBP14.91□□□□□ -0.02
LINC00540-203ENST00000631321 DHX40Q8IX18 779 aaKnown RBP14.91□□□□□ -0.02
LINC00540-203ENST00000631321 ZNF710Q8N1W2 664 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 KCNG4Q8TDN1 519 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 C8orf76Q96K31 380 aa14.91□□□□□ -0.02
LINC00540-203ENST00000631321 DDX60Q8IY21 1712 aaKnown RBP14.9□□□□□ -0.02
LINC00540-203ENST00000631321 GOLGA8BA8MQT2 603 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 STARD3NLO95772 234 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.9□□□□□ -0.02
LINC00540-203ENST00000631321 ABCA3Q99758 1704 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 ZNF213O14771 459 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 ADD2P35612 726 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 VGLL2Q8N8G2 317 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 TTLL11Q8NHH1 800 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 PIGBQ92521 554 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 ORC3Q9UBD5 711 aaPredicted RBP14.9□□□□□ -0.02
LINC00540-203ENST00000631321 ASAP1Q9ULH1 1129 aa14.9□□□□□ -0.02
LINC00540-203ENST00000631321 NEMFO60524 1076 aa14.89□□□□□ -0.03
LINC00540-203ENST00000631321 MCAMP43121 646 aa14.89□□□□□ -0.03
LINC00540-203ENST00000631321 CCDC144BQ3MJ40 725 aa14.89□□□□□ -0.03
LINC00540-203ENST00000631321 METTL24Q5JXM2 366 aa14.89□□□□□ -0.03
LINC00540-203ENST00000631321 RALYLQ86SE5 291 aaKnown RBP14.89□□□□□ -0.03
LINC00540-203ENST00000631321 NLRP10Q86W26 655 aa14.89□□□□□ -0.03
LINC00540-203ENST00000631321 CCDC144CPQ8IYA2 1237 aa14.89□□□□□ -0.03
LINC00540-203ENST00000631321 CACTINQ8WUQ7 758 aaKnown RBP14.89□□□□□ -0.03
LINC00540-203ENST00000631321 PPFIA3O75145 1194 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 HSP90AB3PQ58FF7 597 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 PI16Q6UXB8 463 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 CEP57L1Q8IYX8 460 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 RIOK3O14730 519 aaKnown RBP14.88□□□□□ -0.03
LINC00540-203ENST00000631321 CTIFO43310 598 aaKnown RBP14.88□□□□□ -0.03
LINC00540-203ENST00000631321 ITGA6P23229 1130 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 CTSWP56202 376 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 TTF1Q15361 905 aaPredicted RBP14.88□□□□□ -0.03
LINC00540-203ENST00000631321 MYSM1Q5VVJ2 828 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 CCDC85AQ96PX6 553 aaPredicted RBP14.88□□□□□ -0.03
LINC00540-203ENST00000631321 NBPF3Q9H094 633 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 SLAIN2Q9P270 581 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 CLIC4Q9Y696 253 aa14.88□□□□□ -0.03
LINC00540-203ENST00000631321 NEDD4P46934 1319 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 UBE3CQ15386 1083 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 OTUD7BQ6GQQ9 843 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 LDHAL6AQ6ZMR3 332 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 NAT10Q9H0A0 1025 aaKnown RBP14.87□□□□□ -0.03
LINC00540-203ENST00000631321 GREM2Q9H772 168 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 STRN4Q9NRL3 753 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 ZNF330Q9Y3S2 320 aaPredicted RBP14.87□□□□□ -0.03
LINC00540-203ENST00000631321 ANKRD18BA2A2Z9 1011 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 BECN2A8MW95 431 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 NDUFA8P51970 172 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 EVA1CP58658 441 aa14.87□□□□□ -0.03
LINC00540-203ENST00000631321 RBM6P78332 1123 aaKnown RBP14.87□□□□□ -0.03
LINC00540-203ENST00000631321 KIF23Q02241 960 aaPredicted RBP14.87□□□□□ -0.03
LINC00540-203ENST00000631321 STK38Q15208 465 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms