RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 WDR62O43379 1518 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 SBNO1A3KN83 1393 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 STAMBPO95630 424 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 GSDMDP57764 484 aa12.95□□□□□ -0.34
CLIP1-219ENST00000620786 EAPPQ56P03 285 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
CLIP1-219ENST00000620786 POLR3AO14802 1390 aaPredicted RBP12.94□□□□□ -0.34
CLIP1-219ENST00000620786 CCDC24Q8N4L8 307 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 KIF18AQ8NI77 898 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 ZKSCAN3Q9BRR0 538 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 WDR70Q9NW82 654 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 UBE2HP62256 183 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 HLTFQ14527 1009 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLIP1-219ENST00000620786 GIGYF2Q6Y7W6 1299 aaKnown RBP12.94□□□□□ -0.34
CLIP1-219ENST00000620786 NIM1KQ8IY84 436 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 USP25Q9UHP3 1055 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 TRIM75PA6NK02 468 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 DHX58Q96C10 678 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 APOBRQ0VD83 1088 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 UBE4AQ14139 1066 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 ZYXQ15942 572 aaKnown RBP12.94□□□□□ -0.34
CLIP1-219ENST00000620786 LRSAM1Q6UWE0 723 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 TMCO3Q6UWJ1 677 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 PHACTR3Q96KR7 559 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 CCDC171Q6TFL3 1326 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 SLC52A2Q9HAB3 445 aa12.94□□□□□ -0.34
CLIP1-219ENST00000620786 CEP85Q6P2H3 762 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 HOOK2Q96ED9 719 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 METTL22Q9BUU2 404 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-219ENST00000620786 IVNS1ABPQ9Y6Y0 642 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 APBB1IPQ7Z5R6 666 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-219ENST00000620786 TTC12Q9H892 705 aaPredicted RBP12.93□□□□□ -0.34
CLIP1-219ENST00000620786 RXRAP19793 462 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 GPR162Q16538 588 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 MSL1Q68DK7 614 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.93□□□□□ -0.341e-6■■■■□ 20.3
CLIP1-219ENST00000620786 PTPRKQ15262 1439 aa12.93□□□□□ -0.34
CLIP1-219ENST00000620786 PSMA7O14818 248 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 GPHNQ9NQX3 736 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-219ENST00000620786 MAST1Q9Y2H9 1570 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 AKR1B10O60218 316 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 PDE6BP35913 854 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 CTAGE1Q96RT6 745 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 NAP1L4Q99733 375 aaKnown RBP12.92□□□□□ -0.34
CLIP1-219ENST00000620786 JADE2Q9NQC1 790 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 KIF4AO95239 1232 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 GJC1P36383 396 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 BRDTQ58F21 947 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-219ENST00000620786 ARMT1Q9H993 441 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 TCIRG1Q13488 830 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 MRPS27Q92552 414 aaKnown RBP12.92□□□□□ -0.34
CLIP1-219ENST00000620786 SOS1Q07889 1333 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-219ENST00000620786 ATP7AQ04656 1500 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 NEMFO60524 1076 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 ZNF165P49910 485 aa12.92□□□□□ -0.34
CLIP1-219ENST00000620786 VAMP4O75379 141 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 EDC4Q6P2E9 1401 aaKnown RBP12.91□□□□□ -0.34
CLIP1-219ENST00000620786 HELLSQ9NRZ9 838 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 COL17A1Q9UMD9 1497 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-219ENST00000620786 A0A1B0GUL7 405 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 ALDH1B1P30837 517 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 GRIPAP1Q4V328 841 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 CREB3L3Q68CJ9 461 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 CNPY2Q9Y2B0 182 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 EYA2O00167 538 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 A1BGP04217 495 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 OTUD6BQ8N6M0 293 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 INCENPQ9NQS7 918 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 TAF5LO75529 589 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 HSP90AA4PQ58FG1 418 aa12.91□□□□□ -0.34
CLIP1-219ENST00000620786 GOLGA6L10A0A0M3HER8 536 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 FSD2A1L4K1 749 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 SPECC1Q5M775 1068 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 PLVAPQ9BX97 442 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 BCS1LQ9Y276 419 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 SHANK2Q9UPX8 1470 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 TMEM110-MUSTN1A8MSY1 372 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 WDR66Q8TBY9 1149 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 IKBKGQ9Y6K9 419 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 SMC1AQ14683 1233 aaKnown RBP12.9□□□□□ -0.34
CLIP1-219ENST00000620786 HS2ST1Q7LGA3 356 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 IL27Q8NEV9 243 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 XAGE2Q96GT9 111 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 ZNF594Q96JF6 807 aaPredicted RBP12.9□□□□□ -0.34
CLIP1-219ENST00000620786 PLIN2Q99541 437 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 PTPDC1A2A3K4 754 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 CHMP2AO43633 222 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 UBASH3AP57075 661 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 DTHD1Q6ZMT9 781 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 FCHSD1Q86WN1 690 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 PPIP5K2O43314 1243 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 EEF2P13639 858 aaKnown RBP12.9□□□□□ -0.34
CLIP1-219ENST00000620786 KIAA0753Q2KHM9 967 aa12.9□□□□□ -0.34
CLIP1-219ENST00000620786 AATFQ9NY61 560 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLIP1-219ENST00000620786 EHBP1Q8NDI1 1231 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 PCDHB15Q9Y5E8 787 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 SHTN1A0MZ66 631 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 ZBED4O75132 1171 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 ADCY5O95622 1261 aa12.89□□□□□ -0.35
CLIP1-219ENST00000620786 MYCLP12524 364 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms