RNA–Protein interactions for RNA: ENST00000618944.4

TP53-223, Transcript of tumor protein p53, human

TSL 1 (best) BASIC

Gene TP53, Length 2,404 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TP53-223	ENST00000618944	KCNF1	Q9H3M0	494 aa		13.14	□□□□□ -0.31
TP53-223	ENST00000618944	FAM13B	Q9NYF5	915 aa		13.14	□□□□□ -0.31
TP53-223	ENST00000618944	PYCARD	Q9ULZ3	195 aa		13.14	□□□□□ -0.31
TP53-223	ENST00000618944	ZBTB1	Q9Y2K1	713 aa		13.14	□□□□□ -0.31
TP53-223	ENST00000618944	KIF3A	Q9Y496	699 aa		13.14	□□□□□ -0.31
TP53-223	ENST00000618944	IDH1	O75874	414 aa	Known RBP	13.13	□□□□□ -0.31
TP53-223	ENST00000618944	POLR3D	P05423	398 aa	Predicted RBP	13.13	□□□□□ -0.31
TP53-223	ENST00000618944	CYP19A1	P11511	503 aa	Predicted RBP	13.13	□□□□□ -0.31
TP53-223	ENST00000618944	ME1	P48163	572 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	TERF1	P54274	439 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	ERCC4	Q92889	916 aa	Predicted RBP	13.13	□□□□□ -0.31
TP53-223	ENST00000618944	FBXW7	Q969H0	707 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	FBXO3	Q9UK99	471 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	SALL1	Q9NSC2	1324 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	CTSW	P56202	376 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	RBM43	Q6ZSC3	357 aa	Known RBP	13.13	□□□□□ -0.31
TP53-223	ENST00000618944	TICAM2	Q86XR7	235 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	KLHL34	Q8N239	644 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	NKX2-3	Q8TAU0	364 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	TRIM5	Q9C035	493 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	TJP1	Q07157	1748 aa		13.13	□□□□□ -0.31
TP53-223	ENST00000618944	CARMIL3	Q8ND23	1372 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	NUP188	Q5SRE5	1749 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	PARP4	Q9UKK3	1724 aa	Known RBP	13.12	□□□□□ -0.31
TP53-223	ENST00000618944	GOLGA8B	A8MQT2	603 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	SNAP23	O00161	211 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	RRP9	O43818	475 aa	Known RBP	13.12	□□□□□ -0.31
TP53-223	ENST00000618944	PTGS1	P23219	599 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	ANTXR2	P58335	489 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	GLIPR1L2	Q4G1C9	344 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	RALYL	Q86SE5	291 aa	Known RBP	13.12	□□□□□ -0.31
TP53-223	ENST00000618944	ZNF396	Q96N95	335 aa	Predicted RBP	13.12	□□□□□ -0.31
TP53-223	ENST00000618944	PIH1D3	Q9NQM4	214 aa	Known RBP	13.12	□□□□□ -0.31
TP53-223	ENST00000618944	NRBP1	Q9UHY1	535 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	NCOA7	Q8NI08	942 aa		13.12	□□□□□ -0.31
TP53-223	ENST00000618944	PHKA1	P46020	1223 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	SNW1	Q13573	536 aa	Known RBP	13.11	□□□□□ -0.31
TP53-223	ENST00000618944	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.11	□□□□□ -0.31
TP53-223	ENST00000618944	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.11	□□□□□ -0.31	5e-6	■■■■□ 26.7
TP53-223	ENST00000618944	HPS5	Q9UPZ3	1129 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	UBR2	Q8IWV8	1755 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	GOLGA6L6	A8MZA4	724 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	CPLX1	O14810	134 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	RXRA	P19793	462 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	ADD2	P35612	726 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	CCDC73	Q6ZRK6	1079 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	CCDC186	Q7Z3E2	898 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	DZIP3	Q86Y13	1208 aa	Known RBP	13.11	□□□□□ -0.31
TP53-223	ENST00000618944	FSIP1	Q8NA03	581 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	C8orf76	Q96K31	380 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	INCENP	Q9NQS7	918 aa		13.11	□□□□□ -0.31
TP53-223	ENST00000618944	ORC3	Q9UBD5	711 aa	Predicted RBP	13.11	□□□□□ -0.31
TP53-223	ENST00000618944	EXOC5	O00471	708 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	PDE8B	O95263	885 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	CCDC102B	Q68D86	513 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.1	□□□□□ -0.31
TP53-223	ENST00000618944	PCDHA7	Q9UN72	937 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	CLIC4	Q9Y696	253 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944		A0A1B0GVL5	298 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	EVC	P57679	992 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	KIAA1524	Q8TCG1	905 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	NBPF3	Q9H094	633 aa		13.1	□□□□□ -0.31
TP53-223	ENST00000618944	CDHR2	Q9BYE9	1310 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	ZNF532	Q9HCE3	1301 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	RIC1	Q4ADV7	1423 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	PDE8A	O60658	829 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	KIN	O60870	393 aa	Known RBP	13.09	□□□□□ -0.31
TP53-223	ENST00000618944	ZNF75D	P51815	510 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	LRMP	Q12912	555 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	TRDN	Q13061	729 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	CCDC144CP	Q8IYA2	1237 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	VGLL2	Q8N8G2	317 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	TSC1	Q92574	1164 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	ARID3A	Q99856	593 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	WWC3	Q9ULE0	1092 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	XIRP1	Q702N8	1843 aa	Known RBP	13.09	□□□□□ -0.31
TP53-223	ENST00000618944	KAT6B	Q8WYB5	2073 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	DHX16	O60231	1041 aa	Known RBP	13.09	□□□□□ -0.31
TP53-223	ENST00000618944	SF3A1	Q15459	793 aa	Known RBP	13.09	□□□□□ -0.31
TP53-223	ENST00000618944	ZSCAN25	Q6NSZ9	544 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	CYB5R4	Q7L1T6	521 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	TBC1D10C	Q8IV04	446 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	FBXL16	Q8N461	479 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	ENGASE	Q8NFI3	743 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	TDRD7	Q8NHU6	1098 aa	Known RBP	13.09	□□□□□ -0.31
TP53-223	ENST00000618944	AIFM3	Q96NN9	605 aa		13.09	□□□□□ -0.31
TP53-223	ENST00000618944	UBN2	Q6ZU65	1347 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	GOLGA6L19	H0YKK7	550 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	SENP2	Q9HC62	589 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	SPTLC3	Q9NUV7	552 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	TPM3	P06753	285 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	FAM160A1	Q05DH4	1040 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	STK38	Q15208	465 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	PLA2G4D	Q86XP0	818 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	FBXO18	Q8NFZ0	1043 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	CHMP4C	Q96CF2	233 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944	SDF4	Q9BRK5	362 aa		13.08	□□□□□ -0.32
TP53-223	ENST00000618944		B4E1Z4	1266 aa		13.07	□□□□□ -0.32
TP53-223	ENST00000618944	KIF28P	B7ZC32	967 aa		13.07	□□□□□ -0.32
TP53-223	ENST00000618944	PDE6A	P16499	860 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms