RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 KCNQ4P56696 695 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 NLRP10Q86W26 655 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 VAT1LQ9HCJ6 419 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 NRKQ7Z2Y5 1582 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 MYO1BO43795 1136 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 STIM1Q13586 685 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 PUS3Q9BZE2 481 aaKnown RBP16.08■□□□□ 0.16
CIITA-213ENST00000618327 HDAC9Q9UKV0 1011 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 SLIT1O75093 1534 aa16.08■□□□□ 0.16
CIITA-213ENST00000618327 HSPA4P34932 840 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 CCDC12Q8WUD4 166 aaPredicted RBP16.07■□□□□ 0.16
CIITA-213ENST00000618327 PALLDQ8WX93 1383 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 SERPINC1P01008 464 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 UBE2HP62256 183 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 MAGEC2Q9UBF1 373 aaPredicted RBP16.07■□□□□ 0.16
CIITA-213ENST00000618327 CIAO1O76071 339 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 KLHL40Q2TBA0 621 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 FSIP1Q8NA03 581 aa16.07■□□□□ 0.16
CIITA-213ENST00000618327 F13A1P00488 732 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 WDR66Q8TBY9 1149 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 HAUS7Q99871 368 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 DBNLQ9UJU6 430 aaKnown RBP16.06■□□□□ 0.16
CIITA-213ENST00000618327 PATL2C9JE40 543 aaKnown RBP16.06■□□□□ 0.16
CIITA-213ENST00000618327 SSBP05455 408 aaKnown RBP eCLIP16.06■□□□□ 0.16
CIITA-213ENST00000618327 SEPT12Q8IYM1 358 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 SPC24Q8NBT2 197 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 DDX19AQ9NUU7 478 aaKnown RBP16.06■□□□□ 0.16
CIITA-213ENST00000618327 WWC3Q9ULE0 1092 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 ZNF532Q9HCE3 1301 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 TRIM37O94972 964 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 EPS15P42566 896 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 RAB3GAP1Q15042 981 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 ZNF772Q68DY9 489 aaPredicted RBP16.06■□□□□ 0.16
CIITA-213ENST00000618327 BMP2KQ9NSY1 1161 aaPredicted RBP16.06■□□□□ 0.16
CIITA-213ENST00000618327 IGKV5-2P06315 115 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 POLA2Q14181 598 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 ZHX3Q9H4I2 956 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 GPR108Q9NPR9 543 aa16.06■□□□□ 0.16
CIITA-213ENST00000618327 PDE8BO95263 885 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 KRT27Q7Z3Y8 459 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 CD163L1Q9NR16 1453 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 HSP90B2PQ58FF3 399 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 FLAD1Q8NFF5 587 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 ITSN1Q15811 1721 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 ARHGAP23Q9P227 1491 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 GNAQP50148 359 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 NOM1Q5C9Z4 860 aaKnown RBP16.05■□□□□ 0.16
CIITA-213ENST00000618327 CCDC102BQ68D86 513 aa16.05■□□□□ 0.16
CIITA-213ENST00000618327 A0A0D9SFI3 127 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 H0YIN7 160 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 PTPN12Q05209 780 aaKnown RBP16.04■□□□□ 0.16
CIITA-213ENST00000618327 PTPDC1A2A3K4 754 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 FEZ1Q99689 392 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 TLR7Q9NYK1 1049 aaKnown RBP16.04■□□□□ 0.16
CIITA-213ENST00000618327 CNPY2Q9Y2B0 182 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 NCOA3Q9Y6Q9 1424 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 B4E1Z4 1266 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 DPP8Q6V1X1 898 aaPredicted RBP16.04■□□□□ 0.16
CIITA-213ENST00000618327 H7C1W4 665 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 CTAGE5O15320 804 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 CALM1P0DP23 149 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 CALM2P0DP24 149 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 CALM3P0DP25 149 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 CKAP2LQ8IYA6 745 aa16.04■□□□□ 0.16
CIITA-213ENST00000618327 SOS2Q07890 1332 aaPredicted RBP16.03■□□□□ 0.16
CIITA-213ENST00000618327 CHRNDQ07001 517 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 DSCC1Q9BVC3 393 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 RTL9Q8NET4 1388 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 SSH2Q76I76 1423 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 TEX11Q8IYF3 940 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 ACBD3Q9H3P7 528 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 IQSEC2Q5JU85 1478 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 ANO10Q9NW15 660 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 BAG6P46379 1132 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 DNM1Q05193 864 aaKnown RBP16.03■□□□□ 0.16
CIITA-213ENST00000618327 PPP4R3BQ5MIZ7 849 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 JDP2Q8WYK2 163 aa16.03■□□□□ 0.16
CIITA-213ENST00000618327 CCDC66A2RUB6 948 aa16.02■□□□□ 0.16
CIITA-213ENST00000618327 SMTNL1A8MU46 457 aa16.02■□□□□ 0.16
CIITA-213ENST00000618327 RXRAP19793 462 aa16.02■□□□□ 0.16
CIITA-213ENST00000618327 BCAMP50895 628 aa16.02■□□□□ 0.16
CIITA-213ENST00000618327 ZKSCAN3Q9BRR0 538 aa16.02■□□□□ 0.16
CIITA-213ENST00000618327 SYT1P21579 422 aa16.02■□□□□ 0.15
CIITA-213ENST00000618327 GYG1P46976 350 aa16.02■□□□□ 0.15
CIITA-213ENST00000618327 CUL5Q93034 780 aa16.02■□□□□ 0.15
CIITA-213ENST00000618327 TMEM87BQ96K49 555 aa16.02■□□□□ 0.15
CIITA-213ENST00000618327 AFF2P51816 1311 aa16.02■□□□□ 0.15
CIITA-213ENST00000618327 ALDH1B1P30837 517 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 PTH1RQ03431 593 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 USP48Q86UV5 1035 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 RAB34Q9BZG1 259 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 TM6SF1Q9BZW5 370 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 AATFQ9NY61 560 aaKnown RBP eCLIP16.01■□□□□ 0.15
CIITA-213ENST00000618327 DCCP43146 1447 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 ADORA1P30542 326 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 MPNDQ8N594 471 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 CNNM3Q8NE01 707 aa16.01■□□□□ 0.15
CIITA-213ENST00000618327 SEC62Q99442 399 aaKnown RBP16.01■□□□□ 0.15
CIITA-213ENST00000618327 RBM27Q9P2N5 1060 aaKnown RBP16.01■□□□□ 0.15
CIITA-213ENST00000618327 HLFQ16534 295 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms