RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 RGS17Q9UGC6 210 aaPredicted RBP9.31□□□□□ -0.92
NEK3-207ENST00000617054 DENND2AQ9ULE3 1009 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 TPCN1Q9ULQ1 816 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 C4BP0C0L5 1744 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 TAF1LQ8IZX4 1826 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 SEMA3EO15041 775 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 APPP05067 770 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 ME3Q16798 604 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 MSL1Q68DK7 614 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 CNBD1Q8NA66 436 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 NYXQ9GZU5 481 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 INCENPQ9NQS7 918 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 HELLSQ9NRZ9 838 aa9.31□□□□□ -0.92
NEK3-207ENST00000617054 BSDC1Q9NW68 430 aaPredicted RBP9.31□□□□□ -0.92
NEK3-207ENST00000617054 GPAA1O43292 621 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 DEKP35659 375 aaKnown RBP9.3□□□□□ -0.92
NEK3-207ENST00000617054 ZNF772Q68DY9 489 aaPredicted RBP9.3□□□□□ -0.92
NEK3-207ENST00000617054 BLOC1S2Q6QNY1 142 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 POTEAQ6S8J7 498 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 MAGEB6Q8N7X4 407 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 MIGA1Q8NAN2 632 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 AKAP11Q9UKA4 1901 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 FGAP02671 866 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 SLC10A5Q5PT55 438 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 RNF20Q5VTR2 975 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 PRR5LQ6MZQ0 368 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 VPS37DQ86XT2 251 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 NKX2-3Q8TAU0 364 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 LIMCH1Q9UPQ0 1083 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 BCORQ6W2J9 1755 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 LY75O60449 1722 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 SERPINB2P05120 415 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 ARID4AP29374 1257 aaPredicted RBP9.3□□□□□ -0.92
NEK3-207ENST00000617054 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.3□□□□□ -0.92
NEK3-207ENST00000617054 KCNB2Q92953 911 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 NEK1Q96PY6 1258 aa9.3□□□□□ -0.92
NEK3-207ENST00000617054 GPHNQ9NQX3 736 aaPredicted RBP9.3□□□□□ -0.92
NEK3-207ENST00000617054 EPB41L2O43491 1005 aaKnown RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 HSP90B1P14625 803 aaKnown RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 PDE6AP16499 860 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 ADD2P35612 726 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 ST3GAL1Q11201 340 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 ZC3H15Q8WU90 426 aaKnown RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 IL17RAQ96F46 866 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 PRKAB2O43741 272 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 RPS6KB1P23443 525 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 DDR1Q08345 913 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 CUL4AQ13619 759 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 TOB2Q14106 344 aaPredicted RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 FAM84BQ96KN1 310 aaPredicted RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 ANKIB1Q9P2G1 1089 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 LRP2BPQ9P2M1 347 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 NAP1L2Q9ULW6 460 aaPredicted RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 MCM2P49736 904 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 MCTP1Q6DN14 999 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 OLFM4Q6UX06 510 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 Q6ZUG5 572 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 ADGRA1Q86SQ6 560 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 COL23A1Q86Y22 540 aaPredicted RBP9.29□□□□□ -0.92
NEK3-207ENST00000617054 RAB11FIP4Q86YS3 637 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 APPBP2Q92624 585 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 ARMT1Q9H993 441 aa9.29□□□□□ -0.92
NEK3-207ENST00000617054 CARMIL3Q8ND23 1372 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 E7EWF7 191 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 SMIM22K7EJ46 135 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 CHAF1AQ13111 956 aaPredicted RBP9.28□□□□□ -0.92
NEK3-207ENST00000617054 SLC27A3Q5K4L6 730 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.28□□□□□ -0.92
NEK3-207ENST00000617054 CICQ96RK0 1608 aaPredicted RBP9.28□□□□□ -0.92
NEK3-207ENST00000617054 RPAP1Q9BWH6 1393 aaPredicted RBP9.28□□□□□ -0.92
NEK3-207ENST00000617054 UQCRFS1P1P0C7P4 283 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 PSMA5P28066 241 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 FGD1P98174 961 aa9.28□□□□□ -0.92
NEK3-207ENST00000617054 C4AP0C0L4 1744 aa9.27□□□□□ -0.92
NEK3-207ENST00000617054 TCRBV5S4A2TA0A5A2 114 aa9.27□□□□□ -0.92
NEK3-207ENST00000617054 BAG4O95429 457 aaKnown RBP9.27□□□□□ -0.92
NEK3-207ENST00000617054 BRF1Q92994 677 aa9.27□□□□□ -0.92
NEK3-207ENST00000617054 DSCC1Q9BVC3 393 aa9.27□□□□□ -0.92
NEK3-207ENST00000617054 TM6SF1Q9BZW5 370 aa9.27□□□□□ -0.92
NEK3-207ENST00000617054 ZNF831Q5JPB2 1677 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 MBD4O95243 580 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 EN1Q05925 392 aaPredicted RBP9.27□□□□□ -0.93
NEK3-207ENST00000617054 TTF1Q15361 905 aaPredicted RBP9.27□□□□□ -0.93
NEK3-207ENST00000617054 AIDAQ96BJ3 306 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 GDPD2Q9HCC8 539 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 CWC22Q9HCG8 908 aaKnown RBP9.27□□□□□ -0.93
NEK3-207ENST00000617054 RAI14Q9P0K7 980 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 NSFL1CQ9UNZ2 370 aaKnown RBP9.27□□□□□ -0.93
NEK3-207ENST00000617054 RTL9Q8NET4 1388 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 SCN7AQ01118 1682 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 TRAK2O60296 914 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 GJB2P29033 226 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 APOBRQ0VD83 1088 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 CAVIN4Q5BKX8 364 aa9.27□□□□□ -0.93
NEK3-207ENST00000617054 ZNF512BQ96KM6 892 aaPredicted RBP9.27□□□□□ -0.93
NEK3-207ENST00000617054 ZFYP08048 801 aaPredicted RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 CCT2P78371 535 aaKnown RBP9.26□□□□□ -0.93
NEK3-207ENST00000617054 MAP3K12Q12852 859 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 SLC4A8Q2Y0W8 1093 aa9.26□□□□□ -0.93
NEK3-207ENST00000617054 LCORLQ8N3X6 602 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms