RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MYL5Q02045 173 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 TNNI3KQ59H18 835 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 ZFP91Q96JP5 570 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-212ENST00000616140 SAMM50Q9Y512 469 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 NDUFB9Q9Y6M9 179 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 FPGT-TNNI3KV9GXZ4 949 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 INSRP06213 1382 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 MAGEB6P1A0A0J9YX57 407 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 GADD45BO75293 160 aaPredicted RBP15.94■□□□□ 0.14
CPSF1-212ENST00000616140 SPATA31E1Q6ZUB1 1445 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 TBCAO75347 108 aaKnown RBP15.94■□□□□ 0.14
CPSF1-212ENST00000616140 HOXB7P09629 217 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 CALML3P27482 149 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 SETDB2Q96T68 719 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 UTP14AQ9BVJ6 771 aaKnown RBP15.94■□□□□ 0.14
CPSF1-212ENST00000616140 CABP5Q9NP86 173 aa15.94■□□□□ 0.14
CPSF1-212ENST00000616140 TUBB4AP04350 444 aa15.93■□□□□ 0.14
CPSF1-212ENST00000616140 ATL3Q6DD88 541 aa15.93■□□□□ 0.14
CPSF1-212ENST00000616140 KRI1Q8N9T8 703 aaKnown RBP15.93■□□□□ 0.14
CPSF1-212ENST00000616140 GNAT2P19087 354 aa15.93■□□□□ 0.14
CPSF1-212ENST00000616140 CKAP4Q07065 602 aaKnown RBP15.93■□□□□ 0.14
CPSF1-212ENST00000616140 OTUD7BQ6GQQ9 843 aa15.93■□□□□ 0.14
CPSF1-212ENST00000616140 MCM9Q9NXL9 1143 aa15.93■□□□□ 0.14
CPSF1-212ENST00000616140 TMEM63CQ9P1W3 806 aa15.93■□□□□ 0.14
CPSF1-212ENST00000616140 HMGB2P26583 209 aaKnown RBP15.93■□□□□ 0.14
CPSF1-212ENST00000616140 EDC4Q6P2E9 1401 aaKnown RBP15.93■□□□□ 0.14
CPSF1-212ENST00000616140 CTAGE9A4FU28 777 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 STXBP4Q6ZWJ1 553 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 TAOK3Q9H2K8 898 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 HELLSQ9NRZ9 838 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 BABAM1Q9NWV8 329 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 B4E1Z4 1266 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 GSPT1P15170 499 aaKnown RBP15.92■□□□□ 0.14
CPSF1-212ENST00000616140 GSTO1P78417 241 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 KIF5AQ12840 1032 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 C17orf53Q8N3J3 647 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-212ENST00000616140 CCDC42Q96M95 316 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 C19orf44Q9H6X5 657 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 TBX22Q9Y458 520 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 F8W031 263 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-212ENST00000616140 MBD4O95243 580 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 IQUBQ8NA54 791 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 METTL22Q9BUU2 404 aaPredicted RBP15.92■□□□□ 0.14
CPSF1-212ENST00000616140 ADGRL2O95490 1459 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 GUCA1BQ9UMX6 200 aa15.92■□□□□ 0.14
CPSF1-212ENST00000616140 CALM1P0DP23 149 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 CALM2P0DP24 149 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 CALM3P0DP25 149 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 MCM7P33993 719 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 HSPA4P34932 840 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 ARID5AQ03989 594 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 WDR78Q5VTH9 848 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 PPP4R3AQ6IN85 833 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 AOX1Q06278 1338 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 SBNO1A3KN83 1393 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 KRT86O43790 486 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 TACC1O75410 805 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 SMC1AQ14683 1233 aaKnown RBP15.91■□□□□ 0.14
CPSF1-212ENST00000616140 LEO1Q8WVC0 666 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-212ENST00000616140 SUCLG2Q96I99 432 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 GOLGA6L10A0A0M3HER8 536 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 GCOM1H8Y6P7 765 aaPredicted RBP15.91■□□□□ 0.14
CPSF1-212ENST00000616140 MYZAPP0CAP1 466 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 CHMP4BP1P59074 171 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 MICALCLQ6ZW33 695 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 HOOK3Q86VS8 718 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 EHMT1Q9H9B1 1298 aa15.91■□□□□ 0.14
CPSF1-212ENST00000616140 KBTBD3Q8NAB2 608 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 ERMNQ8TAM6 284 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 GOLGA1Q92805 767 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 PUF60Q9UHX1 559 aaKnown RBP15.9■□□□□ 0.14
CPSF1-212ENST00000616140 BRD1O95696 1058 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 KRT2P35908 639 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 ZNF594Q96JF6 807 aaPredicted RBP15.9■□□□□ 0.14
CPSF1-212ENST00000616140 SCLT1Q96NL6 688 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 CTNNA2P26232 953 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 ZNF569Q5MCW4 686 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 PLIN2Q99541 437 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 ELP1O95163 1332 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 PHACTR2O75167 634 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 UBXN1Q04323 297 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 DDB1Q16531 1140 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 CEP112Q8N8E3 955 aa15.9■□□□□ 0.14
CPSF1-212ENST00000616140 VWA3AA6NCI4 1184 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 ANO1Q5XXA6 986 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 PLBD2Q8NHP8 589 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 USP44Q9H0E7 712 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 JAG2Q9Y219 1238 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 LUC7L2Q9Y383 392 aaKnown RBP15.89■□□□□ 0.13
CPSF1-212ENST00000616140 TRPM2O94759 1503 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 JAK2O60674 1132 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 KRT83P78385 493 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 PICALMQ13492 652 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 KIAA0753Q2KHM9 967 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 CDC37L1Q7L3B6 337 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 TIGD1Q96MW7 591 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 CBX8Q9HC52 389 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 C6orf50Q9HD87 102 aa15.89■□□□□ 0.13
CPSF1-212ENST00000616140 ANGEL1Q9UNK9 670 aaKnown RBP15.89■□□□□ 0.13
CPSF1-212ENST00000616140 NSFL1CQ9UNZ2 370 aaKnown RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms