RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 CARMIL3Q8ND23 1372 aa16.38■□□□□ 0.21
COL6A1-207ENST00000612273 ZSCAN20P17040 1043 aaPredicted RBP16.38■□□□□ 0.21
COL6A1-207ENST00000612273 IL15P40933 162 aaPredicted RBP16.38■□□□□ 0.21
COL6A1-207ENST00000612273 CCDC158Q5M9N0 1113 aa16.38■□□□□ 0.21
COL6A1-207ENST00000612273 RBM43Q6ZSC3 357 aaKnown RBP16.38■□□□□ 0.21
COL6A1-207ENST00000612273 NKX2-3Q8TAU0 364 aa16.38■□□□□ 0.21
COL6A1-207ENST00000612273 XAGE2Q96GT9 111 aa16.38■□□□□ 0.21
COL6A1-207ENST00000612273 MEGF6O75095 1541 aa16.38■□□□□ 0.21
COL6A1-207ENST00000612273 CASP7P55210 303 aa16.37■□□□□ 0.21
COL6A1-207ENST00000612273 IMMTQ16891 758 aaKnown RBP16.37■□□□□ 0.21
COL6A1-207ENST00000612273 NAA16Q6N069 864 aaPredicted RBP16.37■□□□□ 0.21
COL6A1-207ENST00000612273 XPO4Q9C0E2 1151 aaKnown RBP16.37■□□□□ 0.21
COL6A1-207ENST00000612273 KIF28PB7ZC32 967 aa16.37■□□□□ 0.21
COL6A1-207ENST00000612273 ADGRL3Q9HAR2 1447 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 SMAP1Q8IYB5 467 aaPredicted RBP16.36■□□□□ 0.21
COL6A1-207ENST00000612273 ALDH8A1Q9H2A2 487 aaPredicted RBP16.36■□□□□ 0.21
COL6A1-207ENST00000612273 SENP2Q9HC62 589 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 HELLSQ9NRZ9 838 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 MED1Q15648 1581 aaPredicted RBP16.36■□□□□ 0.21
COL6A1-207ENST00000612273 SMTNL1A8MU46 457 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 H7C1W4 665 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 ATP1A3P13637 1013 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 PDIA4P13667 645 aaKnown RBP16.36■□□□□ 0.21
COL6A1-207ENST00000612273 DSCC1Q9BVC3 393 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 PRDM11Q9NQV5 511 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 MARF1Q9Y4F3 1742 aaKnown RBP16.36■□□□□ 0.21
COL6A1-207ENST00000612273 KIF13AQ9H1H9 1805 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 SPTLC2O15270 562 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 SLC3A2P08195 630 aaKnown RBP16.36■□□□□ 0.21
COL6A1-207ENST00000612273 HOMER1Q86YM7 354 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 ENGASEQ8NFI3 743 aa16.36■□□□□ 0.21
COL6A1-207ENST00000612273 ELF2Q15723 593 aa16.35■□□□□ 0.21
COL6A1-207ENST00000612273 RRP12Q5JTH9 1297 aaKnown RBP16.35■□□□□ 0.21
COL6A1-207ENST00000612273 CLIC6Q96NY7 704 aa16.35■□□□□ 0.21
COL6A1-207ENST00000612273 LLPHQ9BRT6 129 aaKnown RBP16.35■□□□□ 0.21
COL6A1-207ENST00000612273 NCAPD2Q15021 1401 aa16.35■□□□□ 0.21
COL6A1-207ENST00000612273 SH3TC1Q8TE82 1336 aa16.35■□□□□ 0.21
COL6A1-207ENST00000612273 ZNF213O14771 459 aa16.35■□□□□ 0.21
COL6A1-207ENST00000612273 NFXL1Q6ZNB6 911 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 CMTR1Q8N1G2 835 aaKnown RBP16.34■□□□□ 0.21
COL6A1-207ENST00000612273 LINC00301Q8NCQ3 95 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 GPAA1O43292 621 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 ZNF202O95125 648 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 METTL24Q5JXM2 366 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 FMR1NBQ8N0W7 255 aaPredicted RBP16.34■□□□□ 0.21
COL6A1-207ENST00000612273 C19orf44Q9H6X5 657 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 KDM3BQ7LBC6 1761 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 CTAGE5O15320 804 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 SLC9C2Q5TAH2 1124 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 SYT10Q6XYQ8 523 aa16.34■□□□□ 0.21
COL6A1-207ENST00000612273 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.34■□□□□ 0.21
COL6A1-207ENST00000612273 B4E1Z4 1266 aa16.33■□□□□ 0.2
COL6A1-207ENST00000612273 MYSM1Q5VVJ2 828 aa16.33■□□□□ 0.2
COL6A1-207ENST00000612273 NAT10Q9H0A0 1025 aaKnown RBP16.33■□□□□ 0.2
COL6A1-207ENST00000612273 KIAA1468Q9P260 1216 aa16.33■□□□□ 0.2
COL6A1-207ENST00000612273 LDHAL6AQ6ZMR3 332 aa16.33■□□□□ 0.2
COL6A1-207ENST00000612273 ZNF771Q7L3S4 317 aaPredicted RBP16.33■□□□□ 0.2
COL6A1-207ENST00000612273 ZKSCAN3Q9BRR0 538 aa16.33■□□□□ 0.2
COL6A1-207ENST00000612273 CCZ1BP86790 482 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 CCZ1P86791 482 aaPredicted RBP16.32■□□□□ 0.2
COL6A1-207ENST00000612273 TRDNQ13061 729 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 LRRN4CLQ8ND94 238 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 ANKRD7Q92527 254 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 CNNM1Q9NRU3 951 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 CTIFO43310 598 aaKnown RBP16.32■□□□□ 0.2
COL6A1-207ENST00000612273 FBXO18Q8NFZ0 1043 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 ZCRB1Q8TBF4 217 aaKnown RBP16.32■□□□□ 0.2
COL6A1-207ENST00000612273 CHMP4CQ96CF2 233 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 FOXP2O15409 715 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 WDHD1O75717 1129 aaPredicted RBP16.32■□□□□ 0.2
COL6A1-207ENST00000612273 PFKFB1P16118 471 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 ANTXR2P58335 489 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 PNOCQ13519 176 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 ADALQ6DHV7 355 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 ZNF274Q96GC6 653 aaPredicted RBP16.32■□□□□ 0.2
COL6A1-207ENST00000612273 MRFAP1L1Q96HT8 127 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 ALG1Q9BT22 464 aa16.32■□□□□ 0.2
COL6A1-207ENST00000612273 SERPINC1P01008 464 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 IFIT5Q13325 482 aaKnown RBP16.31■□□□□ 0.2
COL6A1-207ENST00000612273 PDILTQ8N807 584 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 PALLDQ8WX93 1383 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 SFPQP23246 707 aaKnown RBP eCLIP16.31■□□□□ 0.2
COL6A1-207ENST00000612273 NBPF11Q86T75 865 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 NCOA7Q8NI08 942 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 ST7Q9NRC1 585 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 JCADQ9P266 1359 aa16.31■□□□□ 0.2
COL6A1-207ENST00000612273 CFAP100Q494V2 611 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 CCAR2Q8N163 923 aaKnown RBP16.3■□□□□ 0.2
COL6A1-207ENST00000612273 HPS5Q9UPZ3 1129 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 PAXBP1Q9Y5B6 917 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 IQSEC3Q9UPP2 1182 aaPredicted RBP16.3■□□□□ 0.2
COL6A1-207ENST00000612273 ERCC6LQ2NKX8 1250 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 ANO1Q5XXA6 986 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 DNAJC10Q8IXB1 793 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 KIF18AQ8NI77 898 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 RTEL1Q9NZ71 1219 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 CTNNA3Q9UI47 895 aa16.3■□□□□ 0.2
COL6A1-207ENST00000612273 ZNF827Q17R98 1081 aa16.29■□□□□ 0.2
COL6A1-207ENST00000612273 ARMCX5Q6P1M9 558 aa16.29■□□□□ 0.2
COL6A1-207ENST00000612273 DPF2Q92785 391 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms