RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 GREM2Q9H772 168 aa8.02□□□□□ -1.13
CUX1-220ENST00000607092 CUL9Q8IWT3 2517 aa8.02□□□□□ -1.13
CUX1-220ENST00000607092 KIAA0100Q14667 2235 aaKnown RBP8.02□□□□□ -1.13
CUX1-220ENST00000607092 IL16Q14005 1332 aa8.02□□□□□ -1.13
CUX1-220ENST00000607092 IGKV5-2P06315 115 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 ITGA6P23229 1130 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 GTF2IP78347 998 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 PTPN12Q05209 780 aaKnown RBP8.01□□□□□ -1.13
CUX1-220ENST00000607092 DDX10Q13206 875 aaKnown RBP8.01□□□□□ -1.13
CUX1-220ENST00000607092 UBE3BQ7Z3V4 1068 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 KIAA0825Q8IV33 1275 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 ANKRD13AQ8IZ07 590 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 HOOK2Q96ED9 719 aa8.01□□□□□ -1.13
CUX1-220ENST00000607092 SASH1O94885 1247 aa8□□□□□ -1.13
CUX1-220ENST00000607092 CSF1RP07333 972 aa8□□□□□ -1.13
CUX1-220ENST00000607092 TNNI2P48788 182 aa8□□□□□ -1.13
CUX1-220ENST00000607092 IFIT5Q13325 482 aaKnown RBP8□□□□□ -1.13
CUX1-220ENST00000607092 GCKRQ14397 625 aa8□□□□□ -1.13
CUX1-220ENST00000607092 TWISTNBQ3B726 338 aaPredicted RBP8□□□□□ -1.13
CUX1-220ENST00000607092 PRAMEF18Q5VWM3 479 aa8□□□□□ -1.13
CUX1-220ENST00000607092 MOB2Q70IA6 237 aa8□□□□□ -1.13
CUX1-220ENST00000607092 NBPF11Q86T75 865 aa8□□□□□ -1.13
CUX1-220ENST00000607092 IFNL1Q8IU54 200 aa8□□□□□ -1.13
CUX1-220ENST00000607092 C8orf58Q8NAV2 365 aa8□□□□□ -1.13
CUX1-220ENST00000607092 DNAAF4Q8WXU2 420 aa8□□□□□ -1.13
CUX1-220ENST00000607092 ZBED3Q96IU2 234 aaPredicted RBP8□□□□□ -1.13
CUX1-220ENST00000607092 TMEM106CQ9BVX2 250 aa8□□□□□ -1.13
CUX1-220ENST00000607092 PRKRIP1Q9H875 184 aaPredicted RBP8□□□□□ -1.13
CUX1-220ENST00000607092 CD209Q9NNX6 404 aa8□□□□□ -1.13
CUX1-220ENST00000607092 TRIM17Q9Y577 477 aa8□□□□□ -1.13
CUX1-220ENST00000607092 SPDYE2BA6NHP3 402 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 ECM2O94769 699 aaPredicted RBP7.99□□□□□ -1.13
CUX1-220ENST00000607092 SPDYE6P0CI01 402 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 IL1R1P14778 569 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 CHRNDQ07001 517 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 FLIIQ13045 1269 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 FKBP5Q13451 457 aaPredicted RBP7.99□□□□□ -1.13
CUX1-220ENST00000607092 PRKG1Q13976 671 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 CCDC57Q2TAC2 916 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 TAF7LQ5H9L4 462 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 WNK4Q96J92 1243 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 EFCC1Q9HA90 598 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 MYH3P11055 1940 aa7.99□□□□□ -1.13
CUX1-220ENST00000607092 GNRH1P01148 92 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 RBM5P52756 815 aaKnown RBP eCLIP7.98□□□□□ -1.134e-7■■■□□ 19.1
CUX1-220ENST00000607092 SP3Q02447 781 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 MKRN3Q13064 507 aaKnown RBP7.98□□□□□ -1.13
CUX1-220ENST00000607092 CWF19L2Q2TBE0 894 aaKnown RBP7.98□□□□□ -1.13
CUX1-220ENST00000607092 CFAP100Q494V2 611 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 SPDYE2Q495Y8 402 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 OTOP1Q7RTM1 612 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 PLCD3Q8N3E9 789 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 JARID2Q92833 1246 aaPredicted RBP7.98□□□□□ -1.13
CUX1-220ENST00000607092 ARMC5Q96C12 935 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 VEZTQ9HBM0 779 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 ZFYVE28Q9HCC9 887 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 ZCCHC17Q9NP64 241 aaKnown RBP7.98□□□□□ -1.13
CUX1-220ENST00000607092 SERPINA10Q9UK55 444 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 SSUH2Q9Y2M2 353 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 PTPN22Q9Y2R2 807 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 COL4A1P02462 1669 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 FAM205AQ6ZU69 1335 aa7.98□□□□□ -1.13
CUX1-220ENST00000607092 TRIOBPQ9H2D6 2365 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 TESPA1A2RU30 521 aaPredicted RBP7.97□□□□□ -1.13
CUX1-220ENST00000607092 CAPN2P17655 700 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 GTF2A2P52657 109 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 PRMT2P55345 433 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 KIF22Q14807 665 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 LDHAL6AQ6ZMR3 332 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 TXNRD3Q86VQ6 643 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 POTEDQ86YR6 584 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 TBC1D22AQ8WUA7 517 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 MXD3Q9BW11 206 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 CNNM1Q9NRU3 951 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 CHMP3Q9Y3E7 222 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 CSADQ9Y600 493 aa7.97□□□□□ -1.13
CUX1-220ENST00000607092 IGF2BP3O00425 579 aaKnown RBP eCLIP7.96□□□□□ -1.14
CUX1-220ENST00000607092 HDLBPQ00341 1268 aaKnown RBP7.96□□□□□ -1.14
CUX1-220ENST00000607092 UBE4AQ14139 1066 aa7.96□□□□□ -1.14
CUX1-220ENST00000607092 RASA3Q14644 834 aa7.96□□□□□ -1.14
CUX1-220ENST00000607092 VPS37DQ86XT2 251 aa7.96□□□□□ -1.14
CUX1-220ENST00000607092 HELBQ8NG08 1087 aaPredicted RBP7.96□□□□□ -1.14
CUX1-220ENST00000607092 TMOD2Q9NZR1 351 aa7.96□□□□□ -1.14
CUX1-220ENST00000607092 SCAF8Q9UPN6 1271 aaKnown RBP7.96□□□□□ -1.14
CUX1-220ENST00000607092 MAST3O60307 1309 aa7.96□□□□□ -1.14
CUX1-220ENST00000607092 USP2O75604 605 aaPredicted RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 CETPP11597 493 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 HIBADHP31937 336 aaKnown RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 ZEB1P37275 1124 aaPredicted RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 CASP7P55210 303 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 MAP3K9P80192 1104 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 CRHR2Q13324 411 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 TAF1CQ15572 869 aaPredicted RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 SLC9C1Q4G0N8 1177 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 HABP4Q5JVS0 413 aaKnown RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 MFSD14BQ5SR56 506 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 NBPF12Q5TAG4 269 aaPredicted RBP7.95□□□□□ -1.14
CUX1-220ENST00000607092 FKBP1CQ5VVH2 108 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 WDR63Q8IWG1 891 aa7.95□□□□□ -1.14
CUX1-220ENST00000607092 WWC1Q8IX03 1113 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms