RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 ZBTB48P10074 688 aaPredicted RBP12.14□□□□□ -0.47
VRK3-224ENST00000601849 C15orf52Q6ZUT6 534 aaKnown RBP12.14□□□□□ -0.47
VRK3-224ENST00000601849 CFHR5Q9BXR6 569 aa12.14□□□□□ -0.47
VRK3-224ENST00000601849 MRS2Q9HD23 443 aa12.14□□□□□ -0.47
VRK3-224ENST00000601849 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.14□□□□□ -0.47
VRK3-224ENST00000601849 PCDH10Q9P2E7 1040 aa12.14□□□□□ -0.47
VRK3-224ENST00000601849 COL1A1P02452 1464 aaPredicted RBP12.14□□□□□ -0.47
VRK3-224ENST00000601849 MYH3P11055 1940 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 F8W031 263 aaPredicted RBP12.13□□□□□ -0.47
VRK3-224ENST00000601849 PLIN1O60240 522 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 IL1R1P14778 569 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 IREB2P48200 963 aaKnown RBP12.13□□□□□ -0.47
VRK3-224ENST00000601849 CASP7P55210 303 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 TNFAIP1Q13829 316 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 CFAP100Q494V2 611 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 LDLRAD1Q5T700 205 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 SPRYD7Q5W111 196 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 HELBQ8NG08 1087 aaPredicted RBP12.13□□□□□ -0.47
VRK3-224ENST00000601849 VEZTQ9HBM0 779 aa12.13□□□□□ -0.47
VRK3-224ENST00000601849 SALL2Q9Y467 1007 aaPredicted RBP12.13□□□□□ -0.47
VRK3-224ENST00000601849 FANCIQ9NVI1 1328 aa12.12□□□□□ -0.47
VRK3-224ENST00000601849 KLRK1P26718 216 aa12.12□□□□□ -0.47
VRK3-224ENST00000601849 EXOSC9Q06265 439 aaKnown RBP12.12□□□□□ -0.47
VRK3-224ENST00000601849 ARHGEF6Q15052 776 aa12.12□□□□□ -0.47
VRK3-224ENST00000601849 LMBR1LQ6UX01 489 aa12.12□□□□□ -0.47
VRK3-224ENST00000601849 TNRC18O15417 2968 aaPredicted RBP12.12□□□□□ -0.47
VRK3-224ENST00000601849 GRM8O00222 908 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 WDHD1O75717 1129 aaPredicted RBP12.11□□□□□ -0.47
VRK3-224ENST00000601849 TNNI2P48788 182 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 FOXO4P98177 505 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 MAP3K11Q16584 847 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 BEND3Q5T5X7 828 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 PRPF38BQ5VTL8 546 aaKnown RBP12.11□□□□□ -0.47
VRK3-224ENST00000601849 INTS3Q68E01 1043 aaKnown RBP12.11□□□□□ -0.47
VRK3-224ENST00000601849 VPS37DQ86XT2 251 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 ANKRD13AQ8IZ07 590 aa12.11□□□□□ -0.47
VRK3-224ENST00000601849 ZBED3Q96IU2 234 aaPredicted RBP12.11□□□□□ -0.47
VRK3-224ENST00000601849 CLRN2A0PK11 232 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 SPDYE2BA6NHP3 402 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 FRAT2O75474 233 aaPredicted RBP12.1□□□□□ -0.47
VRK3-224ENST00000601849 ALDH1L1O75891 902 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 SPDYE6P0CI01 402 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 HIBADHP31937 336 aaKnown RBP12.1□□□□□ -0.47
VRK3-224ENST00000601849 UBE4AQ14139 1066 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 SLC4A10Q6U841 1118 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 IFNL1Q8IU54 200 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 ERO1AQ96HE7 468 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 PRMT6Q96LA8 375 aaPredicted RBP12.1□□□□□ -0.47
VRK3-224ENST00000601849 SRCIN1Q9C0H9 1055 aa12.1□□□□□ -0.47
VRK3-224ENST00000601849 SPEF2Q9C093 1822 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 F6X3S4 739 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 RASA3Q14644 834 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 CAVIN4Q5BKX8 364 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 CERS5Q8N5B7 392 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 WNK4Q96J92 1243 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 SERPINA10Q9UK55 444 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 TRIM17Q9Y577 477 aa12.09□□□□□ -0.47
VRK3-224ENST00000601849 SNAP23O00161 211 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 CCDC184Q52MB2 194 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 MFSD14BQ5SR56 506 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 NBPF12Q5TAG4 269 aaPredicted RBP12.08□□□□□ -0.48
VRK3-224ENST00000601849 GCC1Q96CN9 775 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 HOOK2Q96ED9 719 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 ZNF594Q96JF6 807 aaPredicted RBP12.08□□□□□ -0.48
VRK3-224ENST00000601849 TTF2Q9UNY4 1162 aaKnown RBP12.08□□□□□ -0.48
VRK3-224ENST00000601849 FAM205AQ6ZU69 1335 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 MROH5Q6ZUA9 1318 aa12.08□□□□□ -0.48
VRK3-224ENST00000601849 CACNA1FO60840 1977 aa12.07□□□□□ -0.48
VRK3-224ENST00000601849 USP2O75604 605 aaPredicted RBP12.07□□□□□ -0.48
VRK3-224ENST00000601849 TDRD7Q8NHU6 1098 aaKnown RBP12.07□□□□□ -0.48
VRK3-224ENST00000601849 TBC1D22AQ8WUA7 517 aa12.07□□□□□ -0.48
VRK3-224ENST00000601849 JAG2Q9Y219 1238 aa12.07□□□□□ -0.48
VRK3-224ENST00000601849 CSADQ9Y600 493 aa12.07□□□□□ -0.48
VRK3-224ENST00000601849 SP3Q02447 781 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 NBPF11Q86T75 865 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 CLMNQ96JQ2 1002 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 EFCC1Q9HA90 598 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 TMOD2Q9NZR1 351 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 ZNF70Q9UC06 446 aaPredicted RBP12.06□□□□□ -0.48
VRK3-224ENST00000601849 FZD1Q9UP38 647 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 IRS2Q9Y4H2 1338 aa12.06□□□□□ -0.48
VRK3-224ENST00000601849 ZEB1P37275 1124 aaPredicted RBP12.05□□□□□ -0.48
VRK3-224ENST00000601849 GYG1P46976 350 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 GTF2A2P52657 109 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 SPDYE2Q495Y8 402 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 OTOP1Q7RTM1 612 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 DZIP1LQ8IYY4 767 aaKnown RBP12.05□□□□□ -0.48
VRK3-224ENST00000601849 OPTNQ96CV9 577 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 FAM84BQ96KN1 310 aaPredicted RBP12.05□□□□□ -0.48
VRK3-224ENST00000601849 TMEM106CQ9BVX2 250 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 TDRD3Q9H7E2 651 aaKnown RBP12.05□□□□□ -0.48
VRK3-224ENST00000601849 ZFYVE28Q9HCC9 887 aa12.05□□□□□ -0.48
VRK3-224ENST00000601849 TCP10L2B9ZVM9 353 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 IGF2BP3O00425 579 aaKnown RBP eCLIP12.04□□□□□ -0.48
VRK3-224ENST00000601849 CRKP46108 304 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 MAP3K9P80192 1104 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 HDLBPQ00341 1268 aaKnown RBP12.04□□□□□ -0.48
VRK3-224ENST00000601849 METTL24Q5JXM2 366 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 EPHA10Q5JZY3 1008 aa12.04□□□□□ -0.48
VRK3-224ENST00000601849 FAM9BQ8IZU0 186 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms