RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 TXNRD3Q86VQ6 643 aa16.35■□□□□ 0.21
SCAF1-202ENST00000595242 JARID2Q92833 1246 aaPredicted RBP16.35■□□□□ 0.21
SCAF1-202ENST00000595242 PRO3102Q9H379 93 aa16.35■□□□□ 0.21
SCAF1-202ENST00000595242 HYPKQ9NX55 129 aa16.35■□□□□ 0.21
SCAF1-202ENST00000595242 MINPP1Q9UNW1 487 aa16.35■□□□□ 0.21
SCAF1-202ENST00000595242 PPP2R3BQ9Y5P8 575 aa16.35■□□□□ 0.21
SCAF1-202ENST00000595242 USP2O75604 605 aaPredicted RBP16.34■□□□□ 0.21
SCAF1-202ENST00000595242 MNX1P50219 401 aaPredicted RBP16.34■□□□□ 0.21
SCAF1-202ENST00000595242 CCT4P50991 539 aaKnown RBP16.34■□□□□ 0.21
SCAF1-202ENST00000595242 DLGAP5Q15398 846 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 RIC3Q7Z5B4 369 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 ANKRD13AQ8IZ07 590 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 TRMT2AQ8IZ69 625 aaKnown RBP16.34■□□□□ 0.21
SCAF1-202ENST00000595242 RUNDC1Q96C34 613 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 CDCA7LQ96GN5 454 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 CDC5LQ99459 802 aaKnown RBP16.34■□□□□ 0.21
SCAF1-202ENST00000595242 ZFYVE28Q9HCC9 887 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 UNC80Q8N2C7 3258 aa16.34■□□□□ 0.21
SCAF1-202ENST00000595242 CHL1O00533 1208 aa16.33■□□□□ 0.2
SCAF1-202ENST00000595242 PCCAP05165 728 aaPredicted RBP16.33■□□□□ 0.2
SCAF1-202ENST00000595242 GTF2IP78347 998 aa16.33■□□□□ 0.2
SCAF1-202ENST00000595242 GOLGA2Q08379 1002 aa16.33■□□□□ 0.2
SCAF1-202ENST00000595242 TAF1CQ15572 869 aaPredicted RBP16.33■□□□□ 0.2
SCAF1-202ENST00000595242 NBPF12Q5TAG4 269 aaPredicted RBP16.33■□□□□ 0.2
SCAF1-202ENST00000595242 OPTNQ96CV9 577 aa16.33■□□□□ 0.2
SCAF1-202ENST00000595242 MS4A4AQ96JQ5 239 aa16.33■□□□□ 0.2
SCAF1-202ENST00000595242 BSDC1Q9NW68 430 aaPredicted RBP16.33■□□□□ 0.2
SCAF1-202ENST00000595242 PPP4R2Q9NY27 417 aa16.33■□□□□ 0.2
SCAF1-202ENST00000595242 APAF1O14727 1248 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 LMOD3Q0VAK6 560 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 CCDC191Q8NCU4 936 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 SHISA4Q96DD7 197 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 MYD88Q99836 296 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 ELP3Q9H9T3 547 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 RCAN3Q9UKA8 241 aa16.32■□□□□ 0.2
SCAF1-202ENST00000595242 LAS1LQ9Y4W2 734 aaKnown RBP16.32■□□□□ 0.2
SCAF1-202ENST00000595242 ZNF804BA4D1E1 1349 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 MYO1BO43795 1136 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 HOXB7P09629 217 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 TMPOP42166 694 aaKnown RBP16.31■□□□□ 0.2
SCAF1-202ENST00000595242 SLFN5Q08AF3 891 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 CCDC27Q2M243 656 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 DUSP27Q5VZP5 1158 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 CCDC146Q8IYE0 955 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 MTMR14Q8NCE2 650 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 BRI3BPQ8WY22 251 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 ARHGAP39Q9C0H5 1083 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 SALL2Q9Y467 1007 aaPredicted RBP16.31■□□□□ 0.2
SCAF1-202ENST00000595242 PCDHAC2Q9Y5I4 1007 aa16.31■□□□□ 0.2
SCAF1-202ENST00000595242 CLRN2A0PK11 232 aa16.3■□□□□ 0.2
SCAF1-202ENST00000595242 RRP1P56182 461 aaKnown RBP16.3■□□□□ 0.2
SCAF1-202ENST00000595242 HTATIP2Q9BUP3 242 aa16.3■□□□□ 0.2
SCAF1-202ENST00000595242 CWC25Q9NXE8 425 aaPredicted RBP16.3■□□□□ 0.2
SCAF1-202ENST00000595242 LEMD3Q9Y2U8 911 aa16.3■□□□□ 0.2
SCAF1-202ENST00000595242 CCL15-CCL14A0A0B4J2E2 113 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 SOX1O00570 391 aaPredicted RBP16.29■□□□□ 0.2
SCAF1-202ENST00000595242 KLRK1P26718 216 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 CTSWP56202 376 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 KIF22Q14807 665 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 MTFR1Q15390 333 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 CCL15Q16663 113 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 FAM43AQ8N2R8 423 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 PRMT6Q96LA8 375 aaPredicted RBP16.29■□□□□ 0.2
SCAF1-202ENST00000595242 VEZTQ9HBM0 779 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 NR2E3Q9Y5X4 410 aa16.29■□□□□ 0.2
SCAF1-202ENST00000595242 A0A1W2PPC1 479 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 GNRH1P01148 92 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 GTF2A2P52657 109 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 IRX6P78412 446 aaPredicted RBP16.28■□□□□ 0.2
SCAF1-202ENST00000595242 LACTBP83111 547 aaPredicted RBP16.28■□□□□ 0.2
SCAF1-202ENST00000595242 CERS5Q8N5B7 392 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 TTLL11Q8NHH1 800 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 NKX2-3Q8TAU0 364 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 CNKSR2Q8WXI2 1034 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 LRCH3Q96II8 777 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 GREM2Q9H772 168 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 PHAXQ9H814 394 aaKnown RBP16.28■□□□□ 0.2
SCAF1-202ENST00000595242 MGAMO43451 1857 aa16.28■□□□□ 0.2
SCAF1-202ENST00000595242 SPDYE2BA6NHP3 402 aa16.27■□□□□ 0.2
SCAF1-202ENST00000595242 E9PSI1 815 aa16.27■□□□□ 0.2
SCAF1-202ENST00000595242 F8W031 263 aaPredicted RBP16.27■□□□□ 0.2
SCAF1-202ENST00000595242 SPDYE6P0CI01 402 aa16.27■□□□□ 0.2
SCAF1-202ENST00000595242 RASA3Q14644 834 aa16.27■□□□□ 0.2
SCAF1-202ENST00000595242 CFAP100Q494V2 611 aa16.27■□□□□ 0.2
SCAF1-202ENST00000595242 UBE2Q1Q7Z7E8 422 aa16.27■□□□□ 0.2
SCAF1-202ENST00000595242 ALPK3Q96L96 1907 aa16.27■□□□□ 0.19
SCAF1-202ENST00000595242 AOX1Q06278 1338 aa16.26■□□□□ 0.19
SCAF1-202ENST00000595242 ZBTB7BO15156 539 aaPredicted RBP16.26■□□□□ 0.19
SCAF1-202ENST00000595242 TLR2O60603 784 aa16.26■□□□□ 0.19
SCAF1-202ENST00000595242 WDHD1O75717 1129 aaPredicted RBP16.26■□□□□ 0.19
SCAF1-202ENST00000595242 GJA8P48165 433 aa16.26■□□□□ 0.19
SCAF1-202ENST00000595242 PRMT2P55345 433 aa16.26■□□□□ 0.19
SCAF1-202ENST00000595242 NEUROD2Q15784 382 aa16.26■□□□□ 0.19
SCAF1-202ENST00000595242 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.26■□□□□ 0.19
SCAF1-202ENST00000595242 A0A1B0GUL6 1792 aa16.26■□□□□ 0.19
SCAF1-202ENST00000595242 ARAP2Q8WZ64 1704 aa16.25■□□□□ 0.19
SCAF1-202ENST00000595242 WWC1Q8IX03 1113 aa16.25■□□□□ 0.19
SCAF1-202ENST00000595242 CD209Q9NNX6 404 aa16.25■□□□□ 0.19
SCAF1-202ENST00000595242 ECM2O94769 699 aaPredicted RBP16.24■□□□□ 0.19
SCAF1-202ENST00000595242 GJB1P08034 283 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms