RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 CERS3Q8IU89 383 aa15.18■□□□□ 0.02
SMARCA4-216ENST00000591545 PLEKHG1Q9ULL1 1385 aa15.18■□□□□ 0.02
SMARCA4-216ENST00000591545 MIGA1Q8NAN2 632 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 BRF1Q92994 677 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 CCDC113Q9H0I3 377 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 TTC37Q6PGP7 1564 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 KDM5CP41229 1560 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 PUM3Q15397 648 aaKnown RBP15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 KRT24Q2M2I5 525 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 CTR9Q6PD62 1173 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 HEATR3Q7Z4Q2 680 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 WDR66Q8TBY9 1149 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 NAPAP54920 295 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 SPAG1Q07617 926 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 SPECC1LQ69YQ0 1117 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 FAM196AQ6ZSG2 479 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 HOOK3Q86VS8 718 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 RAB11FIP4Q86YS3 637 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 TSPYL6Q8N831 410 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 CTAGE1Q96RT6 745 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 BICC1Q9H694 974 aaKnown RBP15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 TMOD4Q9NZQ9 345 aa15.17■□□□□ 0.02
SMARCA4-216ENST00000591545 SPDYE3A6NKU9 549 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 HS1BP3Q53T59 392 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 DDX12PQ92771 950 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 C6orf50Q9HD87 102 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 RTL9Q8NET4 1388 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 POLR3GO15318 223 aaPredicted RBP15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 STAMBPO95630 424 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 TUBB4BP68371 445 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 SRRTQ9BXP5 876 aaKnown RBP15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 ZMYND15Q9H091 742 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 FAM200AQ8TCP9 573 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 LGR6Q9HBX8 967 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 JAG2Q9Y219 1238 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.16■□□□□ 0.028e-9■■■□□ 15.9
SMARCA4-216ENST00000591545 RBM25P49756 843 aaKnown RBP15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 KRT222Q8N1A0 295 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 KCNG4Q8TDN1 519 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 RRP36Q96EU6 259 aaKnown RBP15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 TMX3Q96JJ7 454 aa15.16■□□□□ 0.02
SMARCA4-216ENST00000591545 SPECC1Q5M775 1068 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 BICD1Q96G01 975 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 BCS1LQ9Y276 419 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 RBM8AQ9Y5S9 174 aaKnown RBP15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 DPY19L2Q6NUT2 758 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 TFIP11Q9UBB9 837 aaKnown RBP15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 EFCAB6Q5THR3 1501 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 CPLX3Q8WVH0 158 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 PREX2Q70Z35 1606 aa15.15■□□□□ 0.02
SMARCA4-216ENST00000591545 HLTFQ14527 1009 aaKnown RBP eCLIP15.14■□□□□ 0.011e-6■□□□□ 10.1
SMARCA4-216ENST00000591545 CCDC40Q4G0X9 1142 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 RNF187Q5TA31 235 aaPredicted RBP15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 LRRIQ1Q96JM4 1722 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 H7C1D1 291 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 SDSP20132 328 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 CALML3P27482 149 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 GNG11P61952 73 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 NCBP1Q09161 790 aaKnown RBP15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 CCDC174Q6PII3 467 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 GDPD2Q9HCC8 539 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 IGHDP01880 384 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 USP37Q86T82 979 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 NLGN1Q8N2Q7 840 aa15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 BBXQ8WY36 941 aaPredicted RBP15.14■□□□□ 0.01
SMARCA4-216ENST00000591545 CCDC172P0C7W6 258 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 GTF2F1P35269 517 aaKnown RBP eCLIP15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 TCERG1LQ5VWI1 586 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 ZNF496Q96IT1 587 aaPredicted RBP15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 GOPCQ9HD26 462 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 PRDM10Q9NQV6 1147 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 ALG1Q9BT22 464 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 ARHGEF10LQ9HCE6 1279 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 CEP112Q8N8E3 955 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 PPIP5K2O43314 1243 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 LARP6Q9BRS8 491 aaKnown RBP15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 UGGT1Q9NYU2 1555 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 CHD1O14646 1710 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 CYLC1P35663 651 aaPredicted RBP15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 TBC1D22AQ8WUA7 517 aa15.13■□□□□ 0.01
SMARCA4-216ENST00000591545 BIN1O00499 593 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 PRC1O43663 620 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 IVLP07476 585 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 SYKP43405 635 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 NMIQ13287 307 aaPredicted RBP15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 CDC42BPAQ5VT25 1732 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 CEP85Q6P2H3 762 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 IVNS1ABPQ9Y6Y0 642 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 NPC1L1Q9UHC9 1359 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 TCIRG1Q13488 830 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 NOLC1Q14978 699 aaKnown RBP eCLIP15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 FERMT2Q96AC1 680 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 GTPBP4Q9BZE4 634 aaKnown RBP15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 A0A1B0GUL7 405 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 CA8P35219 290 aa15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 BRDTQ58F21 947 aaPredicted RBP15.12■□□□□ 0.01
SMARCA4-216ENST00000591545 HSF2BPO75031 334 aa15.11■□□□□ 0.01
SMARCA4-216ENST00000591545 RAB3GAP1Q15042 981 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms