RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 NCBP1Q09161 790 aaKnown RBP12.7□□□□□ -0.38
VPS4B-206ENST00000591475 IQCB1Q15051 598 aa12.7□□□□□ -0.38
VPS4B-206ENST00000591475 MRFAP1L1Q96HT8 127 aa12.7□□□□□ -0.38
VPS4B-206ENST00000591475 SCRN1Q12765 414 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 TFCP2Q12800 502 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 CCDC144BQ3MJ40 725 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 CCDC129Q6ZRS4 1044 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 CCAR1Q8IX12 1150 aaKnown RBP12.69□□□□□ -0.38
VPS4B-206ENST00000591475 CCDC144CPQ8IYA2 1237 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 CCDC112Q8NEF3 446 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 DNAJC2Q99543 621 aaKnown RBP12.69□□□□□ -0.38
VPS4B-206ENST00000591475 FEZ1Q99689 392 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 RCOR1Q9UKL0 485 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 ARFGEF2Q9Y6D5 1785 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 U2AF2P26368 475 aaKnown RBP eCLIP12.69□□□□□ -0.38
VPS4B-206ENST00000591475 RFX5P48382 616 aaPredicted RBP12.69□□□□□ -0.38
VPS4B-206ENST00000591475 ATL3Q6DD88 541 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 CCDC73Q6ZRK6 1079 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 PLBD2Q8NHP8 589 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 HAUS7Q99871 368 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 BRWD3Q6RI45 1802 aa12.69□□□□□ -0.38
VPS4B-206ENST00000591475 SH3TC1Q8TE82 1336 aa12.68□□□□□ -0.38
VPS4B-206ENST00000591475 SPDYE4A6NLX3 237 aa12.68□□□□□ -0.38
VPS4B-206ENST00000591475 ADD1P35611 737 aaKnown RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 IL6STP40189 918 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 CEBPZQ03701 1054 aaKnown RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 PTPN12Q05209 780 aaKnown RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 ITPK1Q13572 414 aa12.68□□□□□ -0.38
VPS4B-206ENST00000591475 C11orf57Q6ZUT1 292 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 LRRC8AQ8IWT6 810 aa12.68□□□□□ -0.38
VPS4B-206ENST00000591475 ZNF396Q96N95 335 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 ZNF831Q5JPB2 1677 aa12.68□□□□□ -0.38
VPS4B-206ENST00000591475 CICQ96RK0 1608 aaPredicted RBP12.68□□□□□ -0.38
VPS4B-206ENST00000591475 BECN2A8MW95 431 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 KINO60870 393 aaKnown RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 CEP135Q66GS9 1140 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 DHX32Q7L7V1 743 aaKnown RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 NSUN7Q8NE18 718 aaKnown RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 SEC62Q99442 399 aaKnown RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 CCDC87Q9NVE4 849 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 ANO10Q9NW15 660 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 CGNQ9P2M7 1197 aaKnown RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 BTAF1O14981 1849 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 SBF2Q86WG5 1849 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 TRIM37O94972 964 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 CRKLP46109 303 aaKnown RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 RABL6Q3YEC7 729 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 DBNDD2Q9BQY9 259 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 LRRC2Q9BYS8 371 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 ZBTB1Q9Y2K1 713 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 ZNF330Q9Y3S2 320 aaPredicted RBP12.67□□□□□ -0.38
VPS4B-206ENST00000591475 NDUFB9Q9Y6M9 179 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 TJP1Q07157 1748 aa12.67□□□□□ -0.38
VPS4B-206ENST00000591475 PTPDC1A2A3K4 754 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 FAM160A1Q05DH4 1040 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 INTS5Q6P9B9 1019 aaKnown RBP12.66□□□□□ -0.38
VPS4B-206ENST00000591475 STOX1Q6ZVD7 989 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 DDX46Q7L014 1031 aaKnown RBP12.66□□□□□ -0.38
VPS4B-206ENST00000591475 KBTBD3Q8NAB2 608 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 CHMP4CQ96CF2 233 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 GOLPH3LQ9H4A5 285 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 OGFRQ9NZT2 677 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 CCNL1Q9UK58 526 aaPredicted RBP12.66□□□□□ -0.38
VPS4B-206ENST00000591475 SNW1Q13573 536 aaKnown RBP12.66□□□□□ -0.38
VPS4B-206ENST00000591475 TTLL7Q6ZT98 887 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 HELLSQ9NRZ9 838 aa12.66□□□□□ -0.38
VPS4B-206ENST00000591475 ZHX1Q9UKY1 873 aaPredicted RBP12.66□□□□□ -0.38
VPS4B-206ENST00000591475 CTDNEP1O95476 244 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 CHGBP05060 677 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 FOSBP53539 338 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 APOBRQ0VD83 1088 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 KIF6Q6ZMV9 814 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 UBE3BQ7Z3V4 1068 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 TICAM2Q86XR7 235 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 CEP57L1Q8IYX8 460 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 USP28Q96RU2 1077 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 DSCC1Q9BVC3 393 aa12.65□□□□□ -0.38
VPS4B-206ENST00000591475 NAT10Q9H0A0 1025 aaKnown RBP12.65□□□□□ -0.38
VPS4B-206ENST00000591475 SKILP12757 684 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 HMGB2P26583 209 aaKnown RBP12.64□□□□□ -0.39
VPS4B-206ENST00000591475 ME1P48163 572 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 EIF5P55010 431 aaKnown RBP12.64□□□□□ -0.39
VPS4B-206ENST00000591475 EXOSC10Q01780 885 aaKnown RBP12.64□□□□□ -0.39
VPS4B-206ENST00000591475 PTPN14Q15678 1187 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 DHX40Q8IX18 779 aaKnown RBP12.64□□□□□ -0.39
VPS4B-206ENST00000591475 FSIP1Q8NA03 581 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 ENGASEQ8NFI3 743 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 ZNF592Q92610 1267 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 AGXT2Q9BYV1 514 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 FTOQ9C0B1 505 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS4B-206ENST00000591475 CTNNA3Q9UI47 895 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 CNTNAP4Q9C0A0 1308 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 SPEF2Q9C093 1822 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 CCDC69A6NI79 296 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 RC3H1Q5TC82 1133 aaKnown RBP12.64□□□□□ -0.39
VPS4B-206ENST00000591475 LINC00116Q8NCU8 138 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 ZBTB3Q9H5J0 574 aa12.64□□□□□ -0.39
VPS4B-206ENST00000591475 SALL1Q9NSC2 1324 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 A0A087WZG4 1122 aa12.63□□□□□ -0.39
VPS4B-206ENST00000591475 KIF20AO95235 890 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms