RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 SLC43A3Q8NBI5 491 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 ACBD3Q9H3P7 528 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.87□□□□□ -1.15
SMAD4-208ENST00000589706 ERVK-7P63135 1459 aa7.87□□□□□ -1.15
SMAD4-208ENST00000589706 USP31Q70CQ4 1352 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 AHDC1Q5TGY3 1603 aaPredicted RBP7.86□□□□□ -1.15
SMAD4-208ENST00000589706 ZNF644Q9H582 1327 aaPredicted RBP7.86□□□□□ -1.15
SMAD4-208ENST00000589706 A0A1W2PNR3 127 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 EPB42P16452 691 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 RHOQP17081 205 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 TANGO6Q9C0B7 1094 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 TMEM63CQ9P1W3 806 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 ABCC3O15438 1527 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 ARHGAP35Q9NRY4 1499 aa7.86□□□□□ -1.15
SMAD4-208ENST00000589706 PTPN12Q05209 780 aaKnown RBP7.85□□□□□ -1.15
SMAD4-208ENST00000589706 TYRO3Q06418 890 aa7.85□□□□□ -1.15
SMAD4-208ENST00000589706 MRPL14Q6P1L8 145 aaKnown RBP7.85□□□□□ -1.15
SMAD4-208ENST00000589706 CEP63Q96MT8 703 aa7.85□□□□□ -1.15
SMAD4-208ENST00000589706 DDX41Q9UJV9 622 aaKnown RBP7.85□□□□□ -1.15
SMAD4-208ENST00000589706 GJA3Q9Y6H8 435 aa7.85□□□□□ -1.15
SMAD4-208ENST00000589706 NKTRP30414 1462 aaKnown RBP7.85□□□□□ -1.15
SMAD4-208ENST00000589706 CFAP65Q6ZU64 1925 aaKnown RBP7.85□□□□□ -1.15
SMAD4-208ENST00000589706 TMEM2Q9UHN6 1383 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 DIP2AQ14689 1571 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 TET3O43151 1660 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 KDM5AP29375 1690 aaKnown RBP7.84□□□□□ -1.15
SMAD4-208ENST00000589706 CCDC18Q5T9S5 1454 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 MBD5Q9P267 1494 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 XYLBO75191 536 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 GRNP28799 593 aaKnown RBP7.84□□□□□ -1.15
SMAD4-208ENST00000589706 GNL2Q13823 731 aaKnown RBP7.84□□□□□ -1.15
SMAD4-208ENST00000589706 TAF1CQ15572 869 aaPredicted RBP7.84□□□□□ -1.15
SMAD4-208ENST00000589706 ZNF394Q53GI3 561 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 HS2ST1Q7LGA3 356 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 ZNF654Q8IZM8 581 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 SRCIN1Q9C0H9 1055 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 CHRDQ9H2X0 955 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 NPHS2Q9NP85 383 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 FAM8A1Q9UBU6 413 aa7.84□□□□□ -1.15
SMAD4-208ENST00000589706 TTLL8A6PVC2 850 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 EGFRP00533 1210 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 POLR3DP05423 398 aaPredicted RBP7.83□□□□□ -1.16
SMAD4-208ENST00000589706 TNNI2P48788 182 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 RACK1P63244 317 aaKnown RBP7.83□□□□□ -1.16
SMAD4-208ENST00000589706 USP48Q86UV5 1035 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 GALNT12Q8IXK2 581 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 C1orf127Q8N9H9 656 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 CRISPLD1Q9H336 500 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 C11orf16Q9NQ32 467 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 PRKAG2Q9UGJ0 569 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 CCNB3Q8WWL7 1395 aa7.83□□□□□ -1.16
SMAD4-208ENST00000589706 EP400Q96L91 3159 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 FIGNL2A6NMB9 653 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 EREGO14944 169 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 GADD45BO75293 160 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-208ENST00000589706 ADAMTS2O95450 1211 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 USP17L7P0C7H9 530 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 ATF3P18847 181 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 SCARF1Q14162 830 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 NWD1Q149M9 1564 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 MEI1Q5TIA1 1274 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 NXPE4Q6UWF7 544 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 BRINP3Q76B58 766 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 DEFB132Q7Z7B7 95 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 NLRP13Q86W25 1043 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 PMEPA1Q969W9 287 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 LRRC59Q96AG4 307 aaKnown RBP7.82□□□□□ -1.16
SMAD4-208ENST00000589706 BCO2Q9BYV7 579 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 GPAMQ9HCL2 828 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 ABI2Q9NYB9 513 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-208ENST00000589706 CNTN3Q9P232 1028 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 GGT7Q9UJ14 662 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 USP21Q9UK80 565 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 TRPC5Q9UL62 973 aaPredicted RBP7.82□□□□□ -1.16
SMAD4-208ENST00000589706 PCDHGB7Q9Y5F8 929 aa7.82□□□□□ -1.16
SMAD4-208ENST00000589706 ATP2B1P20020 1258 aa7.81□□□□□ -1.16
SMAD4-208ENST00000589706 ST13P50502 369 aaKnown RBP7.81□□□□□ -1.16
SMAD4-208ENST00000589706 FAM177A1Q8N128 213 aaPredicted RBP7.81□□□□□ -1.16
SMAD4-208ENST00000589706 C19orf44Q9H6X5 657 aa7.81□□□□□ -1.16
SMAD4-208ENST00000589706 RUBCNLQ9H714 662 aa7.81□□□□□ -1.16
SMAD4-208ENST00000589706 SRA1Q9HD15 236 aaKnown RBP7.81□□□□□ -1.16
SMAD4-208ENST00000589706 BRD7Q9NPI1 651 aa7.81□□□□□ -1.16
SMAD4-208ENST00000589706 INPP5FQ9Y2H2 1132 aa7.81□□□□□ -1.16
SMAD4-208ENST00000589706 SOS2Q07890 1332 aaPredicted RBP7.8□□□□□ -1.16
SMAD4-208ENST00000589706 BLMP54132 1417 aaPredicted RBP7.8□□□□□ -1.16
SMAD4-208ENST00000589706 CASKIN1Q8WXD9 1431 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 SETD5Q9C0A6 1442 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 F11P03951 625 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 SAMD5Q5TGI4 173 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 TTC39BQ5VTQ0 682 aaPredicted RBP7.8□□□□□ -1.16
SMAD4-208ENST00000589706 NLRP8Q86W28 1048 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 YTHDC1Q96MU7 727 aaKnown RBP7.8□□□□□ -1.16
SMAD4-208ENST00000589706 GMLQ99445 158 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 SUV39H2Q9H5I1 410 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 DYRK1BQ9Y463 629 aa7.8□□□□□ -1.16
SMAD4-208ENST00000589706 EEA1Q15075 1411 aa7.79□□□□□ -1.16
SMAD4-208ENST00000589706 NCOA3Q9Y6Q9 1424 aa7.79□□□□□ -1.16
SMAD4-208ENST00000589706 PIK3C2BO00750 1634 aa7.79□□□□□ -1.16
SMAD4-208ENST00000589706 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.79□□□□□ -1.16
SMAD4-208ENST00000589706 CES1P23141 567 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms