RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 DSCC1Q9BVC3 393 aa11.85□□□□□ -0.51
VPS25-202ENST00000589219 BRIP1Q9BX63 1249 aa11.85□□□□□ -0.51
VPS25-202ENST00000589219 ATP6V1DQ9Y5K8 247 aa11.85□□□□□ -0.51
VPS25-202ENST00000589219 CCDC88AQ3V6T2 1871 aa11.85□□□□□ -0.51
VPS25-202ENST00000589219 MYH3P11055 1940 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 ANKRD18BA2A2Z9 1011 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 GOLIM4O00461 696 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 PDE8AO60658 829 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 HMGB1P09429 215 aaKnown RBP11.84□□□□□ -0.51
VPS25-202ENST00000589219 LMNB1P20700 586 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 APLP1P51693 650 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 ZNF445P59923 1031 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 TTC39AQ5SRH9 613 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 TMEM87AQ8NBN3 555 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 ZNF594Q96JF6 807 aaPredicted RBP11.84□□□□□ -0.51
VPS25-202ENST00000589219 GRPEL1Q9HAV7 217 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 NMRK2Q9NPI5 230 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 ZNF652Q9Y2D9 606 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 BCORQ6W2J9 1755 aa11.84□□□□□ -0.51
VPS25-202ENST00000589219 TNRC6CQ9HCJ0 1690 aaKnown RBP11.84□□□□□ -0.51
VPS25-202ENST00000589219 ANKRD31Q8N7Z5 1873 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 IRS4O14654 1257 aaPredicted RBP11.83□□□□□ -0.52
VPS25-202ENST00000589219 RNF113AO15541 343 aaKnown RBP11.83□□□□□ -0.52
VPS25-202ENST00000589219 CAMTA2O94983 1202 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 ZSCAN22P10073 491 aaPredicted RBP11.83□□□□□ -0.52
VPS25-202ENST00000589219 ST5P78524 1137 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 HLFQ16534 295 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 CSPP1Q1MSJ5 1256 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 PARP10Q53GL7 1025 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 GORABQ5T7V8 394 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 CLEC4GQ6UXB4 293 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 CCDC83Q8IWF9 413 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 ZNF34Q8IZ26 560 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 CNBD1Q8NA66 436 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 RBM46Q8TBY0 533 aaKnown RBP11.83□□□□□ -0.52
VPS25-202ENST00000589219 FAM89AQ96GI7 184 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 ZNF512BQ96KM6 892 aaPredicted RBP11.83□□□□□ -0.52
VPS25-202ENST00000589219 PUS3Q9BZE2 481 aaKnown RBP11.83□□□□□ -0.52
VPS25-202ENST00000589219 BRPF3Q9ULD4 1205 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 NUP98P52948 1817 aa11.83□□□□□ -0.52
VPS25-202ENST00000589219 RTL9Q8NET4 1388 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 RGL2O15211 777 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 STX6O43752 255 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 LARGE1O95461 756 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 PDCP20941 246 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 ITGA6P23229 1130 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 GPTP24298 496 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 TIMM10P62072 90 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 ATP2B3Q16720 1220 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 METTL24Q5JXM2 366 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 PRR5LQ6MZQ0 368 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 TTLL11Q8NHH1 800 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 ZNF622Q969S3 477 aaKnown RBP eCLIP11.82□□□□□ -0.52
VPS25-202ENST00000589219 SYAP1Q96A49 352 aaPredicted RBP11.82□□□□□ -0.52
VPS25-202ENST00000589219 XAGE2Q96GT9 111 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 NEK1Q96PY6 1258 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 TRMT112Q9UI30 125 aaKnown RBP11.82□□□□□ -0.52
VPS25-202ENST00000589219 MAST3O60307 1309 aa11.82□□□□□ -0.52
VPS25-202ENST00000589219 PRPF40AO75400 957 aaKnown RBP11.81□□□□□ -0.52
VPS25-202ENST00000589219 F13A1P00488 732 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 XRCC6P12956 609 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS25-202ENST00000589219 CPA1P15085 419 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 NCLP19338 710 aaKnown RBP11.81□□□□□ -0.52
VPS25-202ENST00000589219 GJB2P29033 226 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 FSTL1Q12841 308 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 ME3Q16798 604 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 ZSCAN25Q6NSZ9 544 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 GREM2Q9H772 168 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 TPCN1Q9ULQ1 816 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 RIPOR2Q9Y4F9 1068 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 UBN2Q6ZU65 1347 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 MROH5Q6ZUA9 1318 aa11.81□□□□□ -0.52
VPS25-202ENST00000589219 DICER1Q9UPY3 1922 aaKnown RBP11.8□□□□□ -0.52
VPS25-202ENST00000589219 SYT1P21579 422 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 RASSF7Q02833 373 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 ST3GAL1Q11201 340 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 ZSCAN23Q3MJ62 389 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 CAVIN1Q6NZI2 390 aaKnown RBP11.8□□□□□ -0.52
VPS25-202ENST00000589219 LDHAL6AQ6ZMR3 332 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 CCDC129Q6ZRS4 1044 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 NBPF5PQ86XG9 351 aaPredicted RBP11.8□□□□□ -0.52
VPS25-202ENST00000589219 VGLL2Q8N8G2 317 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 CNKSR1Q969H4 720 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 CHMP4CQ96CF2 233 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.8□□□□□ -0.52
VPS25-202ENST00000589219 RRAGCQ9HB90 399 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 CNNM1Q9NRU3 951 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 NDUFB9Q9Y6M9 179 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 CACNA1SQ13698 1873 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 FER1L6Q2WGJ9 1857 aa11.8□□□□□ -0.52
VPS25-202ENST00000589219 COL11A2P13942 1736 aaPredicted RBP11.8□□□□□ -0.52
VPS25-202ENST00000589219 GLTPD2A6NH11 291 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 CYP21A2P08686 494 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 UQCRFS1P1P0C7P4 283 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 ADORA1P30542 326 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 TOB2Q14106 344 aaPredicted RBP11.79□□□□□ -0.52
VPS25-202ENST00000589219 TTF1Q15361 905 aaPredicted RBP11.79□□□□□ -0.52
VPS25-202ENST00000589219 SOGA3Q5TF21 947 aa11.79□□□□□ -0.52
VPS25-202ENST00000589219 FOXD4L5Q5VV16 416 aaPredicted RBP11.79□□□□□ -0.52
VPS25-202ENST00000589219 STYK1Q6J9G0 422 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms