RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, human

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-208	ENST00000588617	METTL12	A8MUP2	240 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	LMNB1	P20700	586 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	ITPKA	P23677	461 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	EIF6	P56537	245 aa	Known RBP	10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	SCARF1	Q14162	830 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	GRIN2C	Q14957	1233 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	PLEKHG4	Q58EX7	1191 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	DZANK1	Q9NVP4	752 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	COL4A3BP	Q9Y5P4	624 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	ROBO2	Q9HCK4	1378 aa		10.84	□□□□□ -0.67
VMP1-208	ENST00000588617	KHNYN	O15037	678 aa	Known RBP	10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	FAM157B	P0CG42	384 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	MCM4	P33991	863 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	SOX18	P35713	384 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	RPS26	P62854	115 aa	Known RBP	10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	PLAUR	Q03405	335 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	FBXW10	Q5XX13	1052 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	FIGNL1	Q6PIW4	674 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	CEP120	Q8N960	986 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	SH3TC2	Q8TF17	1288 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	CRBN	Q96SW2	442 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	CCDC113	Q9H0I3	377 aa		10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	SLK	Q9H2G2	1235 aa	Predicted RBP	10.83	□□□□□ -0.68
VMP1-208	ENST00000588617	GPN3	Q9UHW5	284 aa	Predicted RBP	10.83	□□□□□ -0.68
VMP1-208	ENST00000588617		A0A096LPE4	126 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617		A0A1W2PPZ6	126 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	DCDC2B	A2VCK2	349 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	PPP1R12A	O14974	1030 aa	Predicted RBP	10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	EFS	O43281	561 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	DNAJC6	O75061	913 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	PAGE1	O75459	146 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	F13A1	P00488	732 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	BNC2	Q6ZN30	1099 aa	Predicted RBP	10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	TRIM42	Q8IWZ5	723 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	FBXO27	Q8NI29	283 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	ASAP3	Q8TDY4	903 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	FERD3L	Q96RJ6	166 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	DNAJC7	Q99615	494 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	SPC25	Q9HBM1	224 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	ST7	Q9NRC1	585 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	FANCL	Q9NW38	375 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	DACH1	Q9UI36	760 aa		10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	SOS2	Q07890	1332 aa	Predicted RBP	10.82	□□□□□ -0.68
VMP1-208	ENST00000588617	CDC45	O75419	566 aa		10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	SMCP	P49901	116 aa	Predicted RBP	10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	IFRD2	Q12894	506 aa	Predicted RBP	10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	NOL8	Q76FK4	1167 aa	Known RBP	10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	CELF2-AS1	Q8N7Q2	184 aa		10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	FAM169B	Q8N8A8	192 aa		10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	JARID2	Q92833	1246 aa	Predicted RBP	10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	NSUN5	Q96P11	429 aa	Known RBP	10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	HHIP	Q96QV1	700 aa		10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	PCDHGC4	Q9Y5F7	938 aa		10.81	□□□□□ -0.68
VMP1-208	ENST00000588617	AXIN1	O15169	862 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	LILRB2	Q8N423	598 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	NXPE3	Q969Y0	559 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	BHLHE41	Q9C0J9	482 aa	Predicted RBP	10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	MIR1-1HG	Q9H1L0	117 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	KANSL2	Q9H9L4	492 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	METTL14	Q9HCE5	456 aa	Known RBP	10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	PCDH12	Q9NPG4	1184 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	ACTR10	Q9NZ32	417 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	PCDHB5	Q9Y5E4	795 aa		10.8	□□□□□ -0.68
VMP1-208	ENST00000588617	MAP3K6	O95382	1288 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	GIPR	P48546	466 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	ZNF157	P51786	506 aa	Predicted RBP	10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	FAAP100	Q0VG06	881 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	LBR	Q14739	615 aa	Known RBP	10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	CWF19L2	Q2TBE0	894 aa	Known RBP	10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	CCDC84	Q86UT8	332 aa	Predicted RBP	10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	TMEM102	Q8N9M5	508 aa	Predicted RBP	10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	TRPM4	Q8TD43	1214 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	GATAD2B	Q8WXI9	593 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	APPBP2	Q92624	585 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	POLR3GL	Q9BT43	218 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	LRRC3	Q9BY71	257 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	ZNF576	Q9H609	170 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	STRN4	Q9NRL3	753 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	MSRB2	Q9Y3D2	182 aa		10.79	□□□□□ -0.68
VMP1-208	ENST00000588617	NFKBIE	O00221	500 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	ZNF165	P49910	485 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	TNP2	Q05952	138 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	SPEM2	Q0P670	501 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	DDR2	Q16832	855 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	RIPOR1	Q6ZS17	1223 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	DHX32	Q7L7V1	743 aa	Known RBP	10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	BHMT	Q93088	406 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	ZNF775	Q96BV0	537 aa	Predicted RBP	10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	TMEM39A	Q9NV64	488 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	PRKAB1	Q9Y478	270 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	SAMM50	Q9Y512	469 aa		10.78	□□□□□ -0.68
VMP1-208	ENST00000588617	PDE2A	O00408	941 aa	Predicted RBP	10.77	□□□□□ -0.69
VMP1-208	ENST00000588617	TRIM37	O94972	964 aa		10.77	□□□□□ -0.69
VMP1-208	ENST00000588617	MAPT	P10636	758 aa	Known RBP	10.77	□□□□□ -0.69
VMP1-208	ENST00000588617	HOXD8	P13378	290 aa	Predicted RBP	10.77	□□□□□ -0.69
VMP1-208	ENST00000588617	LAMC2	Q13753	1193 aa		10.77	□□□□□ -0.69
VMP1-208	ENST00000588617	MPP2	Q14168	576 aa		10.77	□□□□□ -0.69
VMP1-208	ENST00000588617	DIEXF	Q68CQ4	756 aa	Known RBP	10.77	□□□□□ -0.69

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