RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 KIF6Q6ZMV9 814 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 TRIM67Q6ZTA4 783 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 COPS6Q7L5N1 327 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 DZIP1LQ8IYY4 767 aaKnown RBP6.71□□□□□ -1.34
LIG3-210ENST00000588109 NBPF15Q8N660 670 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 LINC00116Q8NCU8 138 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 XAGE3Q8WTP9 111 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 ARHGAP45Q92619 1136 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 TRIM34Q9BYJ4 488 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 ZBTB1Q9Y2K1 713 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 GPSM3Q9Y4H4 160 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 RNF123Q5XPI4 1314 aa6.71□□□□□ -1.34
LIG3-210ENST00000588109 F6X3S4 739 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 RAD21O60216 631 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 DGAT1O75907 488 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 IL6STP40189 918 aaPredicted RBP6.7□□□□□ -1.34
LIG3-210ENST00000588109 PDE3AQ14432 1141 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 C20orf194Q5TEA3 1177 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 INTS5Q6P9B9 1019 aaKnown RBP6.7□□□□□ -1.34
LIG3-210ENST00000588109 ITPRIPQ8IWB1 547 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 MTMR14Q8NCE2 650 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 PANK1Q8TE04 598 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 TOR4AQ9NXH8 423 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 TNNQ9UQP3 1299 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 MAP3K2Q9Y2U5 619 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 CNTNAP4Q9C0A0 1308 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 C4BP0C0L5 1744 aa6.7□□□□□ -1.34
LIG3-210ENST00000588109 RGPD3A6NKT7 1758 aaPredicted RBP6.69□□□□□ -1.34
LIG3-210ENST00000588109 RGPD4Q7Z3J3 1758 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 TAF1LQ8IZX4 1826 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 EP400Q96L91 3159 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 A0A087WZG4 1122 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 PI4KAP2A4QPH2 592 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 NEXNQ0ZGT2 675 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 EZH2Q15910 746 aaKnown RBP6.69□□□□□ -1.34
LIG3-210ENST00000588109 KSR2Q6VAB6 950 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 TTLL7Q6ZT98 887 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 SH3BP5LQ7L8J4 393 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 DZIP3Q86Y13 1208 aaKnown RBP6.69□□□□□ -1.34
LIG3-210ENST00000588109 CCDC125Q86Z20 511 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 TMEM57Q8N5G2 664 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 PI4KAP1Q8N8J0 262 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 DNAAF4Q8WXU2 420 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 CRBNQ96SW2 442 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 LRRC4BQ9NT99 713 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 COG6Q9Y2V7 657 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 RTCBQ9Y3I0 505 aaKnown RBP6.69□□□□□ -1.34
LIG3-210ENST00000588109 ABCC4O15439 1325 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 COL15A1P39059 1388 aa6.69□□□□□ -1.34
LIG3-210ENST00000588109 RREB1Q92766 1687 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 SIAH2O43255 324 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 RPS6KA4O75676 772 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 RLBP1P12271 317 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 CCT4P50991 539 aaKnown RBP6.68□□□□□ -1.34
LIG3-210ENST00000588109 EIF5P55010 431 aaKnown RBP6.68□□□□□ -1.34
LIG3-210ENST00000588109 MVPQ14764 893 aaKnown RBP6.68□□□□□ -1.34
LIG3-210ENST00000588109 LRP10Q7Z4F1 713 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 DEFB132Q7Z7B7 95 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 PLBD2Q8NHP8 589 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 SLC10A4Q96EP9 437 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 MYD88Q99836 296 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 DDX19BQ9UMR2 479 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 TBC1D2BQ9UPU7 963 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 MAP3K15Q6ZN16 1313 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 ADCY9O60503 1353 aa6.68□□□□□ -1.34
LIG3-210ENST00000588109 MYH14Q7Z406 1995 aaKnown RBP6.68□□□□□ -1.34
LIG3-210ENST00000588109 PXDNLA1KZ92 1463 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 ARFGEF2Q9Y6D5 1785 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 ZBBXA8MT70 800 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 J3QL48 77 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 RFC4P35249 363 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 ABL2P42684 1182 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 MCM6Q14566 821 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 HSP90AB3PQ58FF7 597 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 TRAPPC3LQ5T215 181 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 VASH1Q7L8A9 365 aaPredicted RBP6.67□□□□□ -1.34
LIG3-210ENST00000588109 SH3RF1Q7Z6J0 888 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 MPNDQ8N594 471 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 ZNF592Q92610 1267 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 CAMKK2Q96RR4 588 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 METTL22Q9BUU2 404 aaPredicted RBP6.67□□□□□ -1.34
LIG3-210ENST00000588109 SRCIN1Q9C0H9 1055 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 CHMP4BQ9H444 224 aaKnown RBP6.67□□□□□ -1.34
LIG3-210ENST00000588109 STK32BQ9NY57 414 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 TFCP2L1Q9NZI6 479 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 CDV3Q9UKY7 258 aaKnown RBP6.67□□□□□ -1.34
LIG3-210ENST00000588109 ZNF652Q9Y2D9 606 aa6.67□□□□□ -1.34
LIG3-210ENST00000588109 ERVV-1B6SEH8 477 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 ATP5J2-PTCD1G3V325 749 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 SSFA2P28290 1259 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 ZNF827Q17R98 1081 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 ERFEQ4G0M1 354 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 C4orf48Q5BLP8 95 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 BEND3Q5T5X7 828 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 INTS3Q68E01 1043 aaKnown RBP6.66□□□□□ -1.34
LIG3-210ENST00000588109 SMIM5Q71RC9 77 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 LINS1Q8NG48 757 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 EXOC6Q8TAG9 804 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 ADAM32Q8TC27 787 aa6.66□□□□□ -1.34
LIG3-210ENST00000588109 GDPD2Q9HCC8 539 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms