RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ARL4DP49703 201 aa7.53□□□□□ -1.2
SMCHD1-209ENST00000583441 CDPF1Q6NVV7 123 aa7.53□□□□□ -1.2
SMCHD1-209ENST00000583441 ANKLE2Q86XL3 938 aa7.53□□□□□ -1.2
SMCHD1-209ENST00000583441 SMG8Q8ND04 991 aaKnown RBP7.53□□□□□ -1.2
SMCHD1-209ENST00000583441 SLC7A3Q8WY07 619 aa7.53□□□□□ -1.2
SMCHD1-209ENST00000583441 C14orf37Q86TY3 774 aa7.52□□□□□ -1.21
SMCHD1-209ENST00000583441 PPP1R16BQ96T49 567 aa7.52□□□□□ -1.21
SMCHD1-209ENST00000583441 FAM53CQ9NYF3 392 aa7.52□□□□□ -1.21
SMCHD1-209ENST00000583441 TIAF1O95411 115 aa7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 TSPAN15O95858 294 aa7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 RNASE1P07998 156 aaKnown RBP7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 CRTC2Q53ET0 693 aaPredicted RBP7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 MYO19Q96H55 970 aa7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 CSRNP1Q96S65 589 aa7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 TMPRSS13Q9BYE2 586 aa7.51□□□□□ -1.21
SMCHD1-209ENST00000583441 BNIP3Q12983 259 aa7.5□□□□□ -1.21
SMCHD1-209ENST00000583441 MLANAQ16655 118 aa7.5□□□□□ -1.21
SMCHD1-209ENST00000583441 ZNF765Q7L2R6 523 aa7.5□□□□□ -1.21
SMCHD1-209ENST00000583441 POP1Q99575 1024 aaKnown RBP7.5□□□□□ -1.21
SMCHD1-209ENST00000583441 SUGCTQ9HAC7 445 aa7.5□□□□□ -1.21
SMCHD1-209ENST00000583441 DRD2P14416 443 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 FUT4P22083 530 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 CTSWP56202 376 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 TTC39BQ5VTQ0 682 aaPredicted RBP7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 WFDC3Q8IUB2 231 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 PI4K2BQ8TCG2 481 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 GATA6Q92908 595 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 MISP3Q96FF7 219 aa7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 MBNL3Q9NUK0 354 aaKnown RBP7.49□□□□□ -1.21
SMCHD1-209ENST00000583441 ATP9BO43861 1147 aa7.48□□□□□ -1.21
SMCHD1-209ENST00000583441 EZH1Q92800 747 aaPredicted RBP7.48□□□□□ -1.21
SMCHD1-209ENST00000583441 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.48□□□□□ -1.21
SMCHD1-209ENST00000583441 UBAP1LF5GYI3 381 aa7.47□□□□□ -1.21
SMCHD1-209ENST00000583441 C19orf57Q0VDD7 668 aa7.47□□□□□ -1.21
SMCHD1-209ENST00000583441 NCAPG2Q86XI2 1143 aa7.47□□□□□ -1.21
SMCHD1-209ENST00000583441 WWC1Q8IX03 1113 aa7.47□□□□□ -1.21
SMCHD1-209ENST00000583441 LRRN4CLQ8ND94 238 aa7.47□□□□□ -1.21
SMCHD1-209ENST00000583441 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.47□□□□□ -1.21
SMCHD1-209ENST00000583441 KIF4AO95239 1232 aa7.46□□□□□ -1.22
SMCHD1-209ENST00000583441 TRIP4Q15650 581 aaPredicted RBP7.46□□□□□ -1.22
SMCHD1-209ENST00000583441 USP26Q9BXU7 913 aa7.46□□□□□ -1.22
SMCHD1-209ENST00000583441 LRFN2Q9ULH4 789 aa7.46□□□□□ -1.22
SMCHD1-209ENST00000583441 INHBBP09529 407 aa7.45□□□□□ -1.22
SMCHD1-209ENST00000583441 CD8BP10966 210 aa7.45□□□□□ -1.22
SMCHD1-209ENST00000583441 MAP7Q14244 749 aa7.45□□□□□ -1.22
SMCHD1-209ENST00000583441 CEP120Q8N960 986 aa7.45□□□□□ -1.22
SMCHD1-209ENST00000583441 C2CD4AQ8NCU7 369 aaPredicted RBP7.45□□□□□ -1.22
SMCHD1-209ENST00000583441 ADAMTS6Q9UKP5 1117 aa7.45□□□□□ -1.22
SMCHD1-209ENST00000583441 FOXO3O43524 673 aa7.44□□□□□ -1.22
SMCHD1-209ENST00000583441 EXOSC6Q5RKV6 272 aaKnown RBP7.44□□□□□ -1.22
SMCHD1-209ENST00000583441 SYDE1Q6ZW31 735 aaPredicted RBP7.44□□□□□ -1.22
SMCHD1-209ENST00000583441 ZSWIM9Q86XI8 627 aa7.44□□□□□ -1.22
SMCHD1-209ENST00000583441 SOX4Q06945 474 aaPredicted RBP7.43□□□□□ -1.22
SMCHD1-209ENST00000583441 LOC100289279A0A1B0GTE1 492 aa7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 NFICP08651 508 aa7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 KCNMB1Q16558 191 aa7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 HGSNATQ68CP4 663 aa7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 LARP1Q6PKG0 1096 aaKnown RBP7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 DBX2Q6ZNG2 339 aa7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 PIK3R5Q8WYR1 880 aa7.42□□□□□ -1.22
SMCHD1-209ENST00000583441 AMIGO3Q86WK7 504 aa7.41□□□□□ -1.22
SMCHD1-209ENST00000583441 ZNF503-AS2A6NEH8 195 aa7.4□□□□□ -1.22
SMCHD1-209ENST00000583441 RAB6AP20340 208 aa7.4□□□□□ -1.22
SMCHD1-209ENST00000583441 UCN2Q96RP3 112 aa7.4□□□□□ -1.22
SMCHD1-209ENST00000583441 ABI2Q9NYB9 513 aaPredicted RBP7.4□□□□□ -1.22
SMCHD1-209ENST00000583441 FAM13BQ9NYF5 915 aa7.4□□□□□ -1.22
SMCHD1-209ENST00000583441 FNDC3AQ9Y2H6 1198 aaKnown RBP7.4□□□□□ -1.22
SMCHD1-209ENST00000583441 A6NJR5 290 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 NFIBO00712 420 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 DLGAP3O95886 979 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 CYP2E1P05181 493 aaPredicted RBP7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 C1QTNF9P0C862 333 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 DPYDQ12882 1025 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 FLIIQ13045 1269 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 VAV3Q9UKW4 847 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 COG6Q9Y2V7 657 aa7.39□□□□□ -1.23
SMCHD1-209ENST00000583441 OGFOD3Q6PK18 319 aa7.38□□□□□ -1.23
SMCHD1-209ENST00000583441 NETO1Q8TDF5 533 aa7.38□□□□□ -1.23
SMCHD1-209ENST00000583441 RELTQ969Z4 430 aa7.38□□□□□ -1.23
SMCHD1-209ENST00000583441 SOX1O00570 391 aaPredicted RBP7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 WEE1P30291 646 aa7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 IKBKEQ14164 716 aa7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 CYP27C1Q4G0S4 372 aa7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 COX20Q5RI15 118 aa7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 FLAD1Q8NFF5 587 aa7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 LIN37Q96GY3 246 aaPredicted RBP7.37□□□□□ -1.23
SMCHD1-209ENST00000583441 CD96P40200 585 aa7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 PRKCQQ04759 706 aa7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 ETFBKMTQ8IXQ9 262 aa7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 PLD6Q8N2A8 252 aaKnown RBP7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 SEMA6CQ9H3T2 930 aa7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 SOX13Q9UN79 622 aa7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 ACTL7BQ9Y614 415 aa7.36□□□□□ -1.23
SMCHD1-209ENST00000583441 PDE2AO00408 941 aaPredicted RBP7.35□□□□□ -1.23
SMCHD1-209ENST00000583441 ADH5P11766 374 aa7.35□□□□□ -1.23
SMCHD1-209ENST00000583441 BRD2P25440 801 aaKnown RBP7.35□□□□□ -1.23
SMCHD1-209ENST00000583441 HDGFL1Q5TGJ6 251 aa7.35□□□□□ -1.23
SMCHD1-209ENST00000583441 ADAMTS19Q8TE59 1207 aa7.35□□□□□ -1.23
SMCHD1-209ENST00000583441 CRIM1Q9NZV1 1036 aa7.35□□□□□ -1.23
SMCHD1-209ENST00000583441 NPIPB6E9PJ23 425 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms