RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 PLEKHG2Q9H7P9 1386 aa13.42□□□□□ -0.26
SS18-221ENST00000582448 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
SS18-221ENST00000582448 SULT6B1Q6IMI4 303 aa13.41□□□□□ -0.26
SS18-221ENST00000582448 MEIOBQ8N635 442 aa13.41□□□□□ -0.26
SS18-221ENST00000582448 TBC1D2BQ9UPU7 963 aa13.41□□□□□ -0.26
SS18-221ENST00000582448 C4AP0C0L4 1744 aa13.41□□□□□ -0.26
SS18-221ENST00000582448 ZBED9Q6R2W3 1325 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 KDM6AO15550 1401 aaPredicted RBP13.4□□□□□ -0.26
SS18-221ENST00000582448 KIAA1551Q9HCM1 1747 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 POLRMTO00411 1230 aaKnown RBP13.4□□□□□ -0.26
SS18-221ENST00000582448 RAB15P59190 212 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 CBLBQ13191 982 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 INTS5Q6P9B9 1019 aaKnown RBP13.4□□□□□ -0.26
SS18-221ENST00000582448 DNAJC10Q8IXB1 793 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 TNS4Q8IZW8 715 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 JMYQ8N9B5 988 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 SMC1BQ8NDV3 1235 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 CFAP53Q96M91 514 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 KIF13BQ9NQT8 1826 aa13.4□□□□□ -0.26
SS18-221ENST00000582448 ESPNB1AK53 854 aa13.39□□□□□ -0.27
SS18-221ENST00000582448 TM4SF1P30408 202 aa13.39□□□□□ -0.27
SS18-221ENST00000582448 NR1H3Q13133 447 aa13.39□□□□□ -0.27
SS18-221ENST00000582448 NBPF20Q3BBV1 942 aa13.39□□□□□ -0.27
SS18-221ENST00000582448 TMPRSS4Q9NRS4 437 aa13.39□□□□□ -0.27
SS18-221ENST00000582448 PCDHB9Q9Y5E1 797 aa13.39□□□□□ -0.27
SS18-221ENST00000582448 SLC39A6Q13433 755 aa13.38□□□□□ -0.27
SS18-221ENST00000582448 C6orf118Q5T5N4 469 aa13.38□□□□□ -0.27
SS18-221ENST00000582448 SCARF1Q14162 830 aa13.37□□□□□ -0.27
SS18-221ENST00000582448 NFIXQ14938 502 aa13.37□□□□□ -0.27
SS18-221ENST00000582448 LINC00528Q8N1L1 170 aa13.37□□□□□ -0.27
SS18-221ENST00000582448 LGR6Q9HBX8 967 aa13.37□□□□□ -0.27
SS18-221ENST00000582448 WDR90Q96KV7 1748 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 MYH14Q7Z406 1995 aaKnown RBP13.36□□□□□ -0.27
SS18-221ENST00000582448 APBB1O00213 710 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 SERPINB2P05120 415 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 VEGFAP15692 232 aaPredicted RBP13.36□□□□□ -0.27
SS18-221ENST00000582448 DHX9Q08211 1270 aaKnown RBP13.36□□□□□ -0.27
SS18-221ENST00000582448 BICDL1Q6ZP65 573 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 C2CD5Q86YS7 1000 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 PGPEP1Q9NXJ5 209 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
SS18-221ENST00000582448 GLTPD2A6NH11 291 aa13.35□□□□□ -0.27
SS18-221ENST00000582448 ERVH48-1M5A8F1 160 aa13.35□□□□□ -0.27
SS18-221ENST00000582448 HSPA1AP0DMV8 641 aaKnown RBP13.35□□□□□ -0.27
SS18-221ENST00000582448 HSPA1BP0DMV9 641 aaKnown RBP13.35□□□□□ -0.27
SS18-221ENST00000582448 LMNB1P20700 586 aa13.35□□□□□ -0.27
SS18-221ENST00000582448 CANXP27824 592 aaKnown RBP13.35□□□□□ -0.27
SS18-221ENST00000582448 Q6ZVU0 165 aa13.35□□□□□ -0.27
SS18-221ENST00000582448 TTLL6Q8N841 843 aa13.35□□□□□ -0.27
SS18-221ENST00000582448 ANKRD26Q9UPS8 1709 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 SOBPA7XYQ1 873 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 H0YIN7 160 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 CYP19A1P11511 503 aaPredicted RBP13.34□□□□□ -0.27
SS18-221ENST00000582448 PRELPP51888 382 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 IRF5Q13568 498 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 MCM6Q14566 821 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 AKAP4Q5JQC9 854 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 ZNF622Q969S3 477 aaKnown RBP eCLIP13.34□□□□□ -0.27
SS18-221ENST00000582448 SLC52A2Q9HAB3 445 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 NARFQ9UHQ1 456 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 ZBTB1Q9Y2K1 713 aa13.34□□□□□ -0.27
SS18-221ENST00000582448 SOS1Q07889 1333 aaPredicted RBP13.34□□□□□ -0.27
SS18-221ENST00000582448 COL5A3P25940 1745 aaPredicted RBP13.33□□□□□ -0.27
SS18-221ENST00000582448 NEFLP07196 543 aa13.33□□□□□ -0.28
SS18-221ENST00000582448 ARFGEF1Q9Y6D6 1849 aa13.32□□□□□ -0.28
SS18-221ENST00000582448 BRCA1P38398 1863 aaKnown RBP13.32□□□□□ -0.28
SS18-221ENST00000582448 RNMTO43148 476 aaKnown RBP13.32□□□□□ -0.28
SS18-221ENST00000582448 HMOX1P09601 288 aa13.32□□□□□ -0.28
SS18-221ENST00000582448 BMP2P12643 396 aa13.32□□□□□ -0.28
SS18-221ENST00000582448 IL13P35225 146 aa13.32□□□□□ -0.28
SS18-221ENST00000582448 LCE2AQ5TA79 106 aaPredicted RBP13.32□□□□□ -0.28
SS18-221ENST00000582448 ZNF330Q9Y3S2 320 aaPredicted RBP13.32□□□□□ -0.28
SS18-221ENST00000582448 ZNF831Q5JPB2 1677 aa13.31□□□□□ -0.28
SS18-221ENST00000582448 TSEN34Q9BSV6 310 aaKnown RBP13.31□□□□□ -0.28
SS18-221ENST00000582448 GDPD2Q9HCC8 539 aa13.31□□□□□ -0.28
SS18-221ENST00000582448 NUDCQ9Y266 331 aa13.31□□□□□ -0.28
SS18-221ENST00000582448 COL15A1P39059 1388 aa13.31□□□□□ -0.28
SS18-221ENST00000582448 NFKBIEO00221 500 aa13.3□□□□□ -0.28
SS18-221ENST00000582448 C21orf2O43822 256 aa13.3□□□□□ -0.28
SS18-221ENST00000582448 LILRA1O75019 489 aa13.3□□□□□ -0.28
SS18-221ENST00000582448 ADD1P35611 737 aaKnown RBP13.3□□□□□ -0.28
SS18-221ENST00000582448 NFX1Q12986 1120 aaKnown RBP13.3□□□□□ -0.28
SS18-221ENST00000582448 AGBL1Q96MI9 1066 aa13.3□□□□□ -0.28
SS18-221ENST00000582448 ADAMTS8Q9UP79 889 aa13.3□□□□□ -0.28
SS18-221ENST00000582448 NPHP1O15259 732 aa13.29□□□□□ -0.28
SS18-221ENST00000582448 UPP2O95045 317 aa13.29□□□□□ -0.28
SS18-221ENST00000582448 TREML4Q6UXN2 200 aa13.29□□□□□ -0.28
SS18-221ENST00000582448 MKRN1Q9UHC7 482 aaKnown RBP13.29□□□□□ -0.28
SS18-221ENST00000582448 SBF1O95248 1867 aa13.28□□□□□ -0.28
SS18-221ENST00000582448 MTHFSDQ2M296 383 aaKnown RBP13.28□□□□□ -0.28
SS18-221ENST00000582448 TBC1D9BQ66K14 1250 aa13.28□□□□□ -0.28
SS18-221ENST00000582448 TTC5Q8N0Z6 440 aa13.28□□□□□ -0.28
SS18-221ENST00000582448 NGEFQ8N5V2 710 aa13.28□□□□□ -0.28
SS18-221ENST00000582448 STARD3NLO95772 234 aa13.27□□□□□ -0.29
SS18-221ENST00000582448 LCE2CQ5TA81 110 aa13.27□□□□□ -0.29
SS18-221ENST00000582448 CARMIL3Q8ND23 1372 aa13.27□□□□□ -0.29
SS18-221ENST00000582448 TJP1Q07157 1748 aa13.27□□□□□ -0.29
SS18-221ENST00000582448 A0A087WZG4 1122 aa13.26□□□□□ -0.29
SS18-221ENST00000582448 TERTO14746 1132 aaKnown RBP13.26□□□□□ -0.29
SS18-221ENST00000582448 DDNO94850 711 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms