RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 PDIA6Q15084 440 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 ZNF496Q96IT1 587 aaPredicted RBP15.9■□□□□ 0.14
ITGB4-207ENST00000580542 CHPF2Q9P2E5 772 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 SMC3Q9UQE7 1217 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 SGSM2O43147 1006 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 RAB11FIP3O75154 756 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 SURF6O75683 361 aaKnown RBP15.9■□□□□ 0.14
ITGB4-207ENST00000580542 CORO7P57737 925 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 ZRSR1Q15695 479 aaKnown RBP15.9■□□□□ 0.14
ITGB4-207ENST00000580542 SNX14Q9Y5W7 946 aa15.9■□□□□ 0.14
ITGB4-207ENST00000580542 LIG1P18858 919 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 LRCH2Q5VUJ6 765 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 CC2D1AQ6P1N0 951 aaPredicted RBP15.89■□□□□ 0.13
ITGB4-207ENST00000580542 HOMER1Q86YM7 354 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 RNF217Q8TC41 542 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 RHPN1Q8TCX5 695 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 CNKSR2Q8WXI2 1034 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 TTC14Q96N46 770 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 FMNL2Q96PY5 1086 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 PRAMEF22A3QJZ6 481 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 TPM1P09493 284 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 MNAT1P51948 309 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 LRP10Q7Z4F1 713 aa15.89■□□□□ 0.13
ITGB4-207ENST00000580542 LSG1Q9H089 658 aaKnown RBP15.89■□□□□ 0.13
ITGB4-207ENST00000580542 BCL9O00512 1426 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 CCDC196A0A1B0GTZ2 297 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 GOLGA6L4A6NEF3 574 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 SNRPA1P09661 255 aaKnown RBP15.88■□□□□ 0.13
ITGB4-207ENST00000580542 ARFGAP3Q9NP61 516 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 NUTM2BA6NNL0 878 aaPredicted RBP15.88■□□□□ 0.13
ITGB4-207ENST00000580542 NUTM2EB1AL46 878 aaPredicted RBP15.88■□□□□ 0.13
ITGB4-207ENST00000580542 VPS72Q15906 364 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 RPAINQ86UA6 219 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 NUTM2AQ8IVF1 878 aaPredicted RBP15.88■□□□□ 0.13
ITGB4-207ENST00000580542 RASEFQ8IZ41 740 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 ZSCAN16Q9H4T2 348 aaPredicted RBP15.88■□□□□ 0.13
ITGB4-207ENST00000580542 DDX21Q9NR30 783 aaKnown RBP eCLIP15.88■□□□□ 0.13
ITGB4-207ENST00000580542 DACT1Q9NYF0 836 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 VPS18Q9P253 973 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 ADCY9O60503 1353 aa15.88■□□□□ 0.13
ITGB4-207ENST00000580542 GNL2Q13823 731 aaKnown RBP15.87■□□□□ 0.13
ITGB4-207ENST00000580542 PPP2R5AQ15172 486 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 CCDC158Q5M9N0 1113 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 MICALL1Q8N3F8 863 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 DDX54Q8TDD1 881 aaKnown RBP15.87■□□□□ 0.13
ITGB4-207ENST00000580542 EPC1Q9H2F5 836 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 CCDC189A1A4V9 331 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 AK2P54819 239 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 TTC5Q8N0Z6 440 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 LARP6Q9BRS8 491 aaKnown RBP15.87■□□□□ 0.13
ITGB4-207ENST00000580542 HYPKQ9NX55 129 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 EXOC5O00471 708 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 EIF2S2P20042 333 aaKnown RBP15.87■□□□□ 0.13
ITGB4-207ENST00000580542 RUFY3Q7L099 469 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 MRFAP1L1Q96HT8 127 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 PPP1R13BQ96KQ4 1090 aa15.87■□□□□ 0.13
ITGB4-207ENST00000580542 VPS37CA5D8V6 355 aaPredicted RBP15.86■□□□□ 0.13
ITGB4-207ENST00000580542 SRGAP3O43295 1099 aa15.86■□□□□ 0.13
ITGB4-207ENST00000580542 NBPF7P0C2Y1 421 aaPredicted RBP15.86■□□□□ 0.13
ITGB4-207ENST00000580542 EVCP57679 992 aa15.86■□□□□ 0.13
ITGB4-207ENST00000580542 EFCAB13Q8IY85 973 aa15.86■□□□□ 0.13
ITGB4-207ENST00000580542 DNAI1Q9UI46 699 aa15.86■□□□□ 0.13
ITGB4-207ENST00000580542 SGSM3Q96HU1 749 aa15.86■□□□□ 0.13
ITGB4-207ENST00000580542 CARD6Q9BX69 1037 aa15.86■□□□□ 0.13
ITGB4-207ENST00000580542 H3BQF6 201 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 URI1O94763 535 aaPredicted RBP15.85■□□□□ 0.13
ITGB4-207ENST00000580542 MAP2K1Q02750 393 aaPredicted RBP15.85■□□□□ 0.13
ITGB4-207ENST00000580542 PROSER3Q2NL68 480 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 MKRN1Q9UHC7 482 aaKnown RBP15.85■□□□□ 0.13
ITGB4-207ENST00000580542 NUP188Q5SRE5 1749 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 EFCAB8A8MWE9 144 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 DTNBO60941 627 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 SMC2O95347 1197 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 NBPF20Q3BBV1 942 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 CNTROBQ8N137 903 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 KCND1Q9NSA2 647 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 ZNF831Q5JPB2 1677 aa15.85■□□□□ 0.13
ITGB4-207ENST00000580542 TADA3O75528 432 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 HSPA1LP34931 641 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 E4F1Q66K89 784 aaPredicted RBP15.84■□□□□ 0.13
ITGB4-207ENST00000580542 CWC27Q6UX04 472 aaKnown RBP15.84■□□□□ 0.13
ITGB4-207ENST00000580542 TADA2BQ86TJ2 420 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 ARFGEF2Q9Y6D5 1785 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 TTC6Q86TZ1 520 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 LIMCH1Q9UPQ0 1083 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 TJP1Q07157 1748 aa15.84■□□□□ 0.13
ITGB4-207ENST00000580542 IRF6O14896 467 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 LARGE1O95461 756 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 CPP00450 1065 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 CPA1P15085 419 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 BEND3Q5T5X7 828 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 SRRTQ9BXP5 876 aaKnown RBP15.83■□□□□ 0.13
ITGB4-207ENST00000580542 FUT8Q9BYC5 575 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 RAI14Q9P0K7 980 aa15.83■□□□□ 0.13
ITGB4-207ENST00000580542 USP42Q9H9J4 1324 aaKnown RBP15.83■□□□□ 0.13
ITGB4-207ENST00000580542 BECN2A8MW95 431 aa15.83■□□□□ 0.12
ITGB4-207ENST00000580542 PPP1R12AO14974 1030 aaPredicted RBP15.83■□□□□ 0.12
ITGB4-207ENST00000580542 KRT85P78386 507 aa15.83■□□□□ 0.12
ITGB4-207ENST00000580542 SARM1Q6SZW1 724 aa15.83■□□□□ 0.12
ITGB4-207ENST00000580542 PIGBQ92521 554 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms