RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RNF19AQ9NV58 838 aa9.45□□□□□ -0.9
NUP88-213ENST00000576862 TMEM238LA0A1B0GVL6 79 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 C1QTNF9BB2RNN3 333 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 SOX1O00570 391 aaPredicted RBP9.44□□□□□ -0.9
NUP88-213ENST00000576862 ERCC3P19447 782 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 ITPKAP23677 461 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 CABP4P57796 275 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 ATP2B2Q01814 1243 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 OSBPL7Q9BZF2 842 aa9.44□□□□□ -0.9
NUP88-213ENST00000576862 FAM177BA6PVY3 158 aa9.43□□□□□ -0.9
NUP88-213ENST00000576862 ESRRAP11474 423 aaPredicted RBP9.43□□□□□ -0.9
NUP88-213ENST00000576862 MFAP1P55081 439 aaKnown RBP9.43□□□□□ -0.9
NUP88-213ENST00000576862 PIP4K2BP78356 416 aa9.43□□□□□ -0.9
NUP88-213ENST00000576862 TAGLNQ01995 201 aaKnown RBP9.43□□□□□ -0.9
NUP88-213ENST00000576862 NXPE4Q6UWF7 544 aa9.43□□□□□ -0.9
NUP88-213ENST00000576862 KLHDC7BQ96G42 594 aa9.43□□□□□ -0.9
NUP88-213ENST00000576862 ZNF576Q9H609 170 aa9.43□□□□□ -0.9
NUP88-213ENST00000576862 TRAK1Q9UPV9 953 aa9.43□□□□□ -0.9
NUP88-213ENST00000576862 PRPF40AO75400 957 aaKnown RBP9.42□□□□□ -0.9
NUP88-213ENST00000576862 APBA3O96018 575 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 IKBKEQ14164 716 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 ZNF423Q2M1K9 1284 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 FOXD4L6Q3SYB3 417 aaPredicted RBP9.42□□□□□ -0.9
NUP88-213ENST00000576862 FAM117BQ6P1L5 589 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 FOXD4L3Q6VB84 417 aaPredicted RBP9.42□□□□□ -0.9
NUP88-213ENST00000576862 WNT8BQ93098 351 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 LENG1Q96BZ8 264 aaPredicted RBP9.42□□□□□ -0.9
NUP88-213ENST00000576862 SEC31BQ9NQW1 1179 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 KCNK4Q9NYG8 393 aa9.42□□□□□ -0.9
NUP88-213ENST00000576862 PTPN12Q05209 780 aaKnown RBP9.41□□□□□ -0.9
NUP88-213ENST00000576862 IGF2-ASQ6U949 168 aa9.41□□□□□ -0.9
NUP88-213ENST00000576862 KLHL23Q8NBE8 558 aa9.41□□□□□ -0.9
NUP88-213ENST00000576862 SLC7A3Q8WY07 619 aa9.41□□□□□ -0.9
NUP88-213ENST00000576862 CLEC4MQ9H2X3 399 aaPredicted RBP9.41□□□□□ -0.9
NUP88-213ENST00000576862 DDX3YO15523 660 aaKnown RBP9.4□□□□□ -0.9
NUP88-213ENST00000576862 ADAM11O75078 769 aa9.4□□□□□ -0.9
NUP88-213ENST00000576862 CD68P34810 354 aaPredicted RBP9.4□□□□□ -0.9
NUP88-213ENST00000576862 FCGRTP55899 365 aa9.4□□□□□ -0.9
NUP88-213ENST00000576862 PCDH1Q08174 1060 aa9.4□□□□□ -0.9
NUP88-213ENST00000576862 NACC1Q96RE7 527 aa9.4□□□□□ -0.9
NUP88-213ENST00000576862 DUSP9Q99956 384 aaKnown RBP9.4□□□□□ -0.9
NUP88-213ENST00000576862 OSGEPQ9NPF4 335 aa9.4□□□□□ -0.9
NUP88-213ENST00000576862 C9orf172C9J069 976 aa9.39□□□□□ -0.91
NUP88-213ENST00000576862 C19orf57Q0VDD7 668 aa9.39□□□□□ -0.91
NUP88-213ENST00000576862 ADGRE1Q14246 886 aa9.39□□□□□ -0.91
NUP88-213ENST00000576862 C3orf58Q8NDZ4 430 aa9.39□□□□□ -0.91
NUP88-213ENST00000576862 FOXD4L4Q8WXT5 416 aaPredicted RBP9.39□□□□□ -0.91
NUP88-213ENST00000576862 SOX17Q9H6I2 414 aaPredicted RBP9.39□□□□□ -0.91
NUP88-213ENST00000576862 WISP1O95388 367 aa9.38□□□□□ -0.91
NUP88-213ENST00000576862 B3GALT4O96024 378 aa9.38□□□□□ -0.91
NUP88-213ENST00000576862 GNA15P30679 374 aa9.38□□□□□ -0.91
NUP88-213ENST00000576862 FAAP100Q0VG06 881 aa9.38□□□□□ -0.91
NUP88-213ENST00000576862 MBTPS1Q14703 1052 aa9.38□□□□□ -0.91
NUP88-213ENST00000576862 SUZ12Q15022 739 aaKnown RBP9.38□□□□□ -0.91
NUP88-213ENST00000576862 SPG7Q9UQ90 795 aa9.38□□□□□ -0.91
NUP88-213ENST00000576862 GIPC1O14908 333 aa9.37□□□□□ -0.91
NUP88-213ENST00000576862 DTHD1Q6ZMT9 781 aa9.37□□□□□ -0.91
NUP88-213ENST00000576862 DCAF11Q8TEB1 546 aa9.37□□□□□ -0.91
NUP88-213ENST00000576862 SRCIN1Q9C0H9 1055 aa9.37□□□□□ -0.91
NUP88-213ENST00000576862 C12orf49Q9H741 205 aa9.37□□□□□ -0.91
NUP88-213ENST00000576862 PARP2Q9UGN5 583 aa9.37□□□□□ -0.91
NUP88-213ENST00000576862 PROCP04070 461 aa9.36□□□□□ -0.91
NUP88-213ENST00000576862 ARL4DP49703 201 aa9.36□□□□□ -0.91
NUP88-213ENST00000576862 NLRP12P59046 1061 aa9.36□□□□□ -0.91
NUP88-213ENST00000576862 RPS26P11Q5JNZ5 115 aaPredicted RBP9.36□□□□□ -0.91
NUP88-213ENST00000576862 NRSN2Q9GZP1 204 aa9.36□□□□□ -0.91
NUP88-213ENST00000576862 MRPL18Q9H0U6 180 aaKnown RBP9.36□□□□□ -0.91
NUP88-213ENST00000576862 PPP4R2Q9NY27 417 aa9.36□□□□□ -0.91
NUP88-213ENST00000576862 USP21Q9UK80 565 aa9.36□□□□□ -0.91
NUP88-213ENST00000576862 XRCC5P13010 732 aaKnown RBP9.35□□□□□ -0.91
NUP88-213ENST00000576862 FGD1P98174 961 aa9.35□□□□□ -0.91
NUP88-213ENST00000576862 NRG1Q02297 640 aaPredicted RBP9.35□□□□□ -0.91
NUP88-213ENST00000576862 GPAT2Q6NUI2 795 aa9.35□□□□□ -0.91
NUP88-213ENST00000576862 TMEM130Q8N3G9 435 aa9.35□□□□□ -0.91
NUP88-213ENST00000576862 UBASH3BQ8TF42 649 aa9.35□□□□□ -0.91
NUP88-213ENST00000576862 FRMD6Q96NE9 622 aa9.35□□□□□ -0.91
NUP88-213ENST00000576862 F8W735 103 aaPredicted RBP9.34□□□□□ -0.91
NUP88-213ENST00000576862 ALX3O95076 343 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 NOS3P29474 1203 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 GSTT1P30711 240 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 DAB2P98082 770 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 GSTM4Q03013 218 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.34□□□□□ -0.91
NUP88-213ENST00000576862 SPOCK3Q9BQ16 436 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 BCL2L13Q9BXK5 485 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 AK5Q9Y6K8 562 aa9.34□□□□□ -0.91
NUP88-213ENST00000576862 USP17L7P0C7H9 530 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 ZNF157P51786 506 aaPredicted RBP9.33□□□□□ -0.92
NUP88-213ENST00000576862 KIAA1211Q6ZU35 1233 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 TXNRD3Q86VQ6 643 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 AGGF1Q8N302 714 aaeCLIP9.33□□□□□ -0.92
NUP88-213ENST00000576862 WFDC12Q8WWY7 111 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 FAM161BQ96MY7 647 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 TRIM56Q9BRZ2 755 aaKnown RBP9.33□□□□□ -0.92
NUP88-213ENST00000576862 FAM8A1Q9UBU6 413 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 AKAP2Q9Y2D5 859 aa9.33□□□□□ -0.92
NUP88-213ENST00000576862 GATA4P43694 442 aa9.32□□□□□ -0.92
NUP88-213ENST00000576862 IREB2P48200 963 aaKnown RBP9.32□□□□□ -0.92
NUP88-213ENST00000576862 DUOXA2Q1HG44 320 aa9.32□□□□□ -0.92
NUP88-213ENST00000576862 ACAD11Q709F0 780 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms