RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 DNAH12Q6ZR08 3092 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 UNCXA6NJT0 531 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 CTSWP56202 376 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 CCDC184Q52MB2 194 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 CCDC191Q8NCU4 936 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 MYD88Q99836 296 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 PHAXQ9H814 394 aaKnown RBP17.78■□□□□ 0.44
CIITA-211ENST00000576601 MGAMO43451 1857 aa17.78■□□□□ 0.44
CIITA-211ENST00000576601 ZNF804BA4D1E1 1349 aa17.77■□□□□ 0.44
CIITA-211ENST00000576601 HSP90B1P14625 803 aaKnown RBP17.77■□□□□ 0.44
CIITA-211ENST00000576601 TTLL5Q6EMB2 1281 aa17.77■□□□□ 0.44
CIITA-211ENST00000576601 CERS5Q8N5B7 392 aa17.77■□□□□ 0.44
CIITA-211ENST00000576601 MS4A4AQ96JQ5 239 aa17.77■□□□□ 0.44
CIITA-211ENST00000576601 BSDC1Q9NW68 430 aaPredicted RBP17.77■□□□□ 0.44
CIITA-211ENST00000576601 PPP2R3BQ9Y5P8 575 aa17.77■□□□□ 0.44
CIITA-211ENST00000576601 ELL2O00472 640 aaPredicted RBP17.76■□□□□ 0.43
CIITA-211ENST00000576601 PPP1R12BO60237 982 aaPredicted RBP17.76■□□□□ 0.43
CIITA-211ENST00000576601 USP2O75604 605 aaPredicted RBP17.76■□□□□ 0.43
CIITA-211ENST00000576601 NBPF12Q5TAG4 269 aaPredicted RBP17.76■□□□□ 0.43
CIITA-211ENST00000576601 RIC3Q7Z5B4 369 aa17.76■□□□□ 0.43
CIITA-211ENST00000576601 MTMR14Q8NCE2 650 aa17.76■□□□□ 0.43
CIITA-211ENST00000576601 CDC5LQ99459 802 aaKnown RBP17.76■□□□□ 0.43
CIITA-211ENST00000576601 GREM2Q9H772 168 aa17.76■□□□□ 0.43
CIITA-211ENST00000576601 CWC25Q9NXE8 425 aaPredicted RBP17.76■□□□□ 0.43
CIITA-211ENST00000576601 IRS2Q9Y4H2 1338 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 MUC3AQ02505 3323 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 MYCP01106 439 aaPredicted RBP17.75■□□□□ 0.43
CIITA-211ENST00000576601 GOLGA2Q08379 1002 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 SLC4A8Q2Y0W8 1093 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 SLC17A8Q8NDX2 589 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 TTLL11Q8NHH1 800 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 SH3TC2Q8TF17 1288 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 BRI3BPQ8WY22 251 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 IFT57Q9NWB7 429 aa17.75■□□□□ 0.43
CIITA-211ENST00000576601 GTF2IP78347 998 aa17.74■□□□□ 0.43
CIITA-211ENST00000576601 OTUD7BQ6GQQ9 843 aa17.74■□□□□ 0.43
CIITA-211ENST00000576601 NBPF11Q86T75 865 aa17.74■□□□□ 0.43
CIITA-211ENST00000576601 C8orf58Q8NAV2 365 aa17.74■□□□□ 0.43
CIITA-211ENST00000576601 CNKSR2Q8WXI2 1034 aa17.74■□□□□ 0.43
CIITA-211ENST00000576601 ARHGAP39Q9C0H5 1083 aa17.74■□□□□ 0.43
CIITA-211ENST00000576601 CLRN2A0PK11 232 aa17.73■□□□□ 0.43
CIITA-211ENST00000576601 DLGAP5Q15398 846 aa17.73■□□□□ 0.43
CIITA-211ENST00000576601 UBE2Q1Q7Z7E8 422 aa17.73■□□□□ 0.43
CIITA-211ENST00000576601 OPTNQ96CV9 577 aa17.73■□□□□ 0.43
CIITA-211ENST00000576601 SPDYE2BA6NHP3 402 aa17.72■□□□□ 0.43
CIITA-211ENST00000576601 SPDYE6P0CI01 402 aa17.72■□□□□ 0.43
CIITA-211ENST00000576601 CDAN1Q8IWY9 1227 aa17.72■□□□□ 0.43
CIITA-211ENST00000576601 ANKRD13AQ8IZ07 590 aa17.72■□□□□ 0.43
CIITA-211ENST00000576601 METTL22Q9BUU2 404 aaPredicted RBP17.72■□□□□ 0.43
CIITA-211ENST00000576601 ELP3Q9H9T3 547 aa17.72■□□□□ 0.43
CIITA-211ENST00000576601 LEMD3Q9Y2U8 911 aa17.72■□□□□ 0.43
CIITA-211ENST00000576601 CDH23Q9H251 3354 aa17.71■□□□□ 0.43
CIITA-211ENST00000576601 IGKV5-2P06315 115 aa17.71■□□□□ 0.43
CIITA-211ENST00000576601 IREB2P48200 963 aaKnown RBP17.71■□□□□ 0.43
CIITA-211ENST00000576601 GNAI1P63096 354 aa17.71■□□□□ 0.43
CIITA-211ENST00000576601 TAF1CQ15572 869 aaPredicted RBP17.71■□□□□ 0.43
CIITA-211ENST00000576601 SUPT20HL1Q3ZLR7 823 aa17.71■□□□□ 0.43
CIITA-211ENST00000576601 FAM43AQ8N2R8 423 aa17.71■□□□□ 0.43
CIITA-211ENST00000576601 TSPYL6Q8N831 410 aa17.71■□□□□ 0.43
CIITA-211ENST00000576601 PRMT6Q96LA8 375 aaPredicted RBP17.71■□□□□ 0.43
CIITA-211ENST00000576601 SOX1O00570 391 aaPredicted RBP17.7■□□□□ 0.42
CIITA-211ENST00000576601 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.7■□□□□ 0.42
CIITA-211ENST00000576601 TSR2Q969E8 191 aaKnown RBP17.7■□□□□ 0.42
CIITA-211ENST00000576601 RASA3Q14644 834 aa17.69■□□□□ 0.42
CIITA-211ENST00000576601 MTFR1Q15390 333 aa17.69■□□□□ 0.42
CIITA-211ENST00000576601 CFAP100Q494V2 611 aa17.69■□□□□ 0.42
CIITA-211ENST00000576601 CD209Q9NNX6 404 aa17.69■□□□□ 0.42
CIITA-211ENST00000576601 DOCK3Q8IZD9 2030 aa17.69■□□□□ 0.42
CIITA-211ENST00000576601 CCL15-CCL14A0A0B4J2E2 113 aa17.68■□□□□ 0.42
CIITA-211ENST00000576601 SNAP23O00161 211 aa17.68■□□□□ 0.42
CIITA-211ENST00000576601 CCL15Q16663 113 aa17.68■□□□□ 0.42
CIITA-211ENST00000576601 TEPSINQ96N21 525 aa17.68■□□□□ 0.42
CIITA-211ENST00000576601 VEZTQ9HBM0 779 aa17.68■□□□□ 0.42
CIITA-211ENST00000576601 F8W031 263 aaPredicted RBP17.67■□□□□ 0.42
CIITA-211ENST00000576601 CTGFP29279 349 aa17.67■□□□□ 0.42
CIITA-211ENST00000576601 LACTBP83111 547 aaPredicted RBP17.67■□□□□ 0.42
CIITA-211ENST00000576601 VGLL4Q14135 290 aa17.67■□□□□ 0.42
CIITA-211ENST00000576601 ZFYVE28Q9HCC9 887 aa17.67■□□□□ 0.42
CIITA-211ENST00000576601 CACNA1FO60840 1977 aa17.66■□□□□ 0.42
CIITA-211ENST00000576601 CALD1Q05682 793 aaKnown RBP17.66■□□□□ 0.42
CIITA-211ENST00000576601 ARHGEF6Q15052 776 aa17.66■□□□□ 0.42
CIITA-211ENST00000576601 DPF3Q92784 378 aa17.66■□□□□ 0.42
CIITA-211ENST00000576601 MAP3K2Q9Y2U5 619 aa17.66■□□□□ 0.42
CIITA-211ENST00000576601 TLR2O60603 784 aa17.65■□□□□ 0.42
CIITA-211ENST00000576601 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.65■□□□□ 0.42
CIITA-211ENST00000576601 LRCH3Q96II8 777 aa17.65■□□□□ 0.42
CIITA-211ENST00000576601 PTPRFP10586 1907 aa17.64■□□□□ 0.42
CIITA-211ENST00000576601 MYO1BO43795 1136 aa17.64■□□□□ 0.41
CIITA-211ENST00000576601 GTF2A2P52657 109 aa17.64■□□□□ 0.41
CIITA-211ENST00000576601 CHRNDQ07001 517 aa17.64■□□□□ 0.41
CIITA-211ENST00000576601 CWF19L2Q2TBE0 894 aaKnown RBP17.64■□□□□ 0.41
CIITA-211ENST00000576601 SPDYE2Q495Y8 402 aa17.64■□□□□ 0.41
CIITA-211ENST00000576601 C15orf52Q6ZUT6 534 aaKnown RBP17.64■□□□□ 0.41
CIITA-211ENST00000576601 ANKRD2Q9GZV1 360 aa17.64■□□□□ 0.41
CIITA-211ENST00000576601 TTC28Q96AY4 2481 aa17.63■□□□□ 0.41
CIITA-211ENST00000576601 ZBTB7BO15156 539 aaPredicted RBP17.63■□□□□ 0.41
CIITA-211ENST00000576601 IL1R1P14778 569 aa17.63■□□□□ 0.41
CIITA-211ENST00000576601 ITGA6P23229 1130 aa17.63■□□□□ 0.41
CIITA-211ENST00000576601 IGHMBP2P38935 993 aaKnown RBP17.63■□□□□ 0.41
CIITA-211ENST00000576601 MNX1P50219 401 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms