RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF408Q9H9D4 720 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 RAB6BQ9NRW1 208 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 RIPOR2Q9Y4F9 1068 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 NWD2Q9ULI1 1742 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 CUL9Q8IWT3 2517 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 IRS1P35568 1242 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 SH3BP2P78314 561 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 TAF1CQ15572 869 aaPredicted RBP7.88□□□□□ -1.15
VPS53-219ENST00000576019 CCDC181Q5TID7 509 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 VASH1Q7L8A9 365 aaPredicted RBP7.88□□□□□ -1.15
VPS53-219ENST00000576019 GPR152Q8TDT2 470 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 NUDT16Q96DE0 195 aaKnown RBP7.88□□□□□ -1.15
VPS53-219ENST00000576019 RNPC3Q96LT9 517 aaKnown RBP7.88□□□□□ -1.15
VPS53-219ENST00000576019 SRPK1Q96SB4 655 aaKnown RBP7.88□□□□□ -1.15
VPS53-219ENST00000576019 OSBPL7Q9BZF2 842 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 KLK14Q9P0G3 267 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 CHMP3Q9Y3E7 222 aa7.88□□□□□ -1.15
VPS53-219ENST00000576019 RPRD2Q5VT52 1461 aaKnown RBP7.87□□□□□ -1.15
VPS53-219ENST00000576019 A0A0G2JS52 829 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 KIF3BO15066 747 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 DNAJC6O75061 913 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 CPNE3O75131 537 aaKnown RBP7.87□□□□□ -1.15
VPS53-219ENST00000576019 SMTNP53814 917 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 NBPF6Q5VWK0 638 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 ERMP1Q7Z2K6 904 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 NBPF4Q96M43 638 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 PSMD1Q99460 953 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 DNAJC25Q9H1X3 360 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 GGNBP2Q9H3C7 697 aa7.87□□□□□ -1.15
VPS53-219ENST00000576019 THSD7AQ9UPZ6 1657 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 LOC102724159A0A0B4J2E5 919 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 USP17L7P0C7H9 530 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 PCSK2P16519 638 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 PWP2Q15269 919 aaKnown RBP7.86□□□□□ -1.15
VPS53-219ENST00000576019 MTFR1Q15390 333 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 PLEKHG6Q3KR16 790 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 USPL1Q5W0Q7 1092 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 MTFR1LQ9H019 292 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 PLA2G2EQ9NZK7 142 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 MRVI1Q9Y6F6 885 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 RGPD3A6NKT7 1758 aaPredicted RBP7.86□□□□□ -1.15
VPS53-219ENST00000576019 RGPD4Q7Z3J3 1758 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 CDC42BPAQ5VT25 1732 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 CLIP1P30622 1438 aa7.86□□□□□ -1.15
VPS53-219ENST00000576019 PTPN23Q9H3S7 1636 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 TPD52L2O43399 206 aaKnown RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 YBX3P16989 372 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS53-219ENST00000576019 NASPP49321 788 aaPredicted RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 NFX1Q12986 1120 aaKnown RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 C11orf91Q3C1V1 193 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 ANKS3Q6ZW76 656 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 RPUSD2Q8IZ73 545 aaKnown RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 ALDH16A1Q8IZ83 802 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 RASGRP4Q8TDF6 673 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 EPS8L3Q8TE67 593 aaKnown RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 IFT43Q96FT9 208 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 TRIM55Q9BYV6 548 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 SLC6A16Q9GZN6 736 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 SPC25Q9HBM1 224 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 KBTBD4Q9NVX7 518 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 CHPF2Q9P2E5 772 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 FCF1Q9Y324 198 aaKnown RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 ARHGEF28Q8N1W1 1705 aaKnown RBP7.85□□□□□ -1.15
VPS53-219ENST00000576019 PLCH1Q4KWH8 1693 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 KIAA1107Q9UPP5 1409 aa7.85□□□□□ -1.15
VPS53-219ENST00000576019 TRPM2O94759 1503 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 EML1O00423 815 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 ZPR1O75312 459 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 NEFLP07196 543 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 ESCO1Q5FWF5 840 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 FAM196AQ6ZSG2 479 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 CYP2U1Q7Z449 544 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 TTC16Q8NEE8 873 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 MKL1Q969V6 931 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 SPON2Q9BUD6 331 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 ARHGEF10LQ9HCE6 1279 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 SNTG2Q9NY99 539 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 FAM8A1Q9UBU6 413 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 G3BP2Q9UN86 482 aaKnown RBP7.84□□□□□ -1.15
VPS53-219ENST00000576019 ZNF232Q9UNY5 417 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 HCN4Q9Y3Q4 1203 aa7.84□□□□□ -1.15
VPS53-219ENST00000576019 SERTM1A2A2V5 107 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 CCDC85CA6NKD9 419 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 F6X3S4 739 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 MAP4K4O95819 1239 aaPredicted RBP7.83□□□□□ -1.16
VPS53-219ENST00000576019 ITGBL1O95965 494 aaPredicted RBP7.83□□□□□ -1.16
VPS53-219ENST00000576019 ETFBP38117 255 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 ST13P50502 369 aaKnown RBP7.83□□□□□ -1.16
VPS53-219ENST00000576019 TLR1Q15399 786 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 RTN1Q16799 776 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 HSP90AB2PQ58FF8 381 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 TREML1Q86YW5 311 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 KIAA0825Q8IV33 1275 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 HNRNPLLQ8WVV9 542 aaKnown RBP7.83□□□□□ -1.16
VPS53-219ENST00000576019 CCDC74AQ96AQ1 378 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 IRF2BPLQ9H1B7 796 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 SIRPGQ9P1W8 387 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 FOXD3Q9UJU5 478 aaPredicted RBP7.83□□□□□ -1.16
VPS53-219ENST00000576019 MAP4K5Q9Y4K4 846 aa7.83□□□□□ -1.16
VPS53-219ENST00000576019 NOS1P29475 1434 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms