RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 SIPA1L3O60292 1781 aaPredicted RBP14.21□□□□□ -0.14
CIITA-209ENST00000573309 LIMCH1Q9UPQ0 1083 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 MTMR6Q9Y217 621 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 LRP6O75581 1613 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 BCAMP50895 628 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 CCDC158Q5M9N0 1113 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 TAF3Q5VWG9 929 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 FAM200AQ8TCP9 573 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 RUFY2Q8WXA3 655 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 ABCF2Q9UG63 623 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 GJB2P29033 226 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 SYCP1Q15431 976 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 BARGINQ6ZT62 677 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 LRRC4BQ9NT99 713 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 PKD1L3Q7Z443 1732 aa14.2□□□□□ -0.14
CIITA-209ENST00000573309 LIG1P18858 919 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 ZSCAN25Q6NSZ9 544 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 NBPF5PQ86XG9 351 aaPredicted RBP14.19□□□□□ -0.14
CIITA-209ENST00000573309 CKAP2LQ8IYA6 745 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 PDRG1Q9NUG6 133 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 PARP4Q9UKK3 1724 aaKnown RBP14.19□□□□□ -0.14
CIITA-209ENST00000573309 PDE8AO60658 829 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 TERF2Q15554 542 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 DRC7Q8IY82 874 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 CACNA1FO60840 1977 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 TYRO3Q06418 890 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 CREB3L3Q68CJ9 461 aa14.19□□□□□ -0.14
CIITA-209ENST00000573309 ARHGEF1Q92888 912 aaKnown RBP14.19□□□□□ -0.14
CIITA-209ENST00000573309 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.19□□□□□ -0.14
CIITA-209ENST00000573309 V9GYY5 206 aaPredicted RBP14.19□□□□□ -0.14
CIITA-209ENST00000573309 CCDC171Q6TFL3 1326 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 ATP5JP18859 108 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 RFC4P35249 363 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 GYG1P46976 350 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 PDE4CQ08493 712 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 FAM173BQ6P4H8 233 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 FNBP4Q8N3X1 1017 aaPredicted RBP14.18□□□□□ -0.14
CIITA-209ENST00000573309 CBX8Q9HC52 389 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 TFCP2L1Q9NZI6 479 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 ZNF219Q9P2Y4 722 aaPredicted RBP14.18□□□□□ -0.14
CIITA-209ENST00000573309 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.18□□□□□ -0.14
CIITA-209ENST00000573309 MSL1Q68DK7 614 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 TTC6Q86TZ1 520 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 ZNF34Q8IZ26 560 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 CCDC112Q8NEF3 446 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 ZNF592Q92610 1267 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 CELF1Q92879 486 aaKnown RBP14.18□□□□□ -0.14
CIITA-209ENST00000573309 AK7Q96M32 723 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 INCENPQ9NQS7 918 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 COL15A1P39059 1388 aa14.18□□□□□ -0.14
CIITA-209ENST00000573309 IRX5P78411 483 aaPredicted RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 ST3GAL1Q11201 340 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 CCDC144BQ3MJ40 725 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 KMT5BQ4FZB7 885 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 CCDC144CPQ8IYA2 1237 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 CACTINQ8WUQ7 758 aaKnown RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 RTCBQ9Y3I0 505 aaKnown RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 ATP6V1DQ9Y5K8 247 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 CYP46A1Q9Y6A2 500 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 HSP90B1P14625 803 aaKnown RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 ZKSCAN1P17029 563 aaPredicted RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 ANO6Q4KMQ2 910 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 MIGA1Q8NAN2 632 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 ST7Q9NRC1 585 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 MCAMP43121 646 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 TPD52L1Q16890 204 aaPredicted RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 SMARCC1Q92922 1105 aaPredicted RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 SETDB2Q96T68 719 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 GPHNQ9NQX3 736 aaPredicted RBP14.17□□□□□ -0.14
CIITA-209ENST00000573309 DENND2AQ9ULE3 1009 aa14.17□□□□□ -0.14
CIITA-209ENST00000573309 USP27XA6NNY8 438 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 SLC27A2O14975 620 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 KLRK1P26718 216 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 ZNF75DP51815 510 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 MAP3K11Q16584 847 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 OSBP2Q969R2 916 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 TRIM5Q9C035 493 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 COL14A1Q05707 1796 aaKnown RBP14.16□□□□□ -0.14
CIITA-209ENST00000573309 AOX1Q06278 1338 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.16□□□□□ -0.14
CIITA-209ENST00000573309 M0R2C6 588 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 PLA2G4DQ86XP0 818 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 RIPOR2Q9Y4F9 1068 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 SLIT2O94813 1529 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 ARID5BQ14865 1188 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 SLC9C2Q5TAH2 1124 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 DDX11Q96FC9 970 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 HAUS7Q99871 368 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 PUS7LQ9H0K6 701 aaKnown RBP14.16□□□□□ -0.14
CIITA-209ENST00000573309 NUP62CLQ9H1M0 184 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 PAXBP1Q9Y5B6 917 aa14.16□□□□□ -0.14
CIITA-209ENST00000573309 AHDC1Q5TGY3 1603 aaPredicted RBP14.15□□□□□ -0.14
CIITA-209ENST00000573309 IGHMBP2P38935 993 aaKnown RBP14.15□□□□□ -0.14
CIITA-209ENST00000573309 TOMM22Q9NS69 142 aa14.15□□□□□ -0.14
CIITA-209ENST00000573309 CCDC102BQ68D86 513 aa14.15□□□□□ -0.14
CIITA-209ENST00000573309 ZNF215Q9UL58 517 aaPredicted RBP14.15□□□□□ -0.14
CIITA-209ENST00000573309 TRPC5Q9UL62 973 aaPredicted RBP14.15□□□□□ -0.14
CIITA-209ENST00000573309 AFDNP55196 1824 aaKnown RBP14.15□□□□□ -0.14
CIITA-209ENST00000573309 CSF1RP07333 972 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms