RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ATP2B3Q16720 1220 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 LRRC24Q50LG9 513 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 TTC39AQ5SRH9 613 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 RNF20Q5VTR2 975 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 TBC1D9BQ66K14 1250 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 TMC4Q7Z404 712 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 HSCBQ8IWL3 235 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 IL17RAQ96F46 866 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 ZBED2Q9BTP6 218 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 FSD1Q9BTV5 496 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 BOLA2Q9H3K6 86 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 SNRKQ9NRH2 765 aa9.61□□□□□ -0.87
VPS39-213ENST00000570062 BSDC1Q9NW68 430 aaPredicted RBP9.61□□□□□ -0.87
VPS39-213ENST00000570062 KAT6BQ8WYB5 2073 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 RIC1Q4ADV7 1423 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 HCLS1P14317 486 aaPredicted RBP9.6□□□□□ -0.87
VPS39-213ENST00000570062 TIMM10P62072 90 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 SF3B2Q13435 895 aaKnown RBP9.6□□□□□ -0.87
VPS39-213ENST00000570062 UBE4AQ14139 1066 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 DDX46Q7L014 1031 aaKnown RBP9.6□□□□□ -0.87
VPS39-213ENST00000570062 PTF1AQ7RTS3 328 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 CCDC125Q86Z20 511 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 KBTBD3Q8NAB2 608 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 XAGE2Q96GT9 111 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 ZNF594Q96JF6 807 aaPredicted RBP9.6□□□□□ -0.87
VPS39-213ENST00000570062 DBNDD2Q9BQY9 259 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.6□□□□□ -0.873e-7■■□□□ 11.5
VPS39-213ENST00000570062 ANO2Q9NQ90 1003 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 HELLSQ9NRZ9 838 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 LRRC4BQ9NT99 713 aa9.6□□□□□ -0.87
VPS39-213ENST00000570062 GNL3LQ9NVN8 582 aaKnown RBP9.6□□□□□ -0.87
VPS39-213ENST00000570062 COL5A3P25940 1745 aaPredicted RBP9.59□□□□□ -0.87
VPS39-213ENST00000570062 AFDNP55196 1824 aaKnown RBP9.59□□□□□ -0.87
VPS39-213ENST00000570062 ZKSCAN1P17029 563 aaPredicted RBP9.59□□□□□ -0.87
VPS39-213ENST00000570062 RPS8P62241 208 aaKnown RBP9.59□□□□□ -0.87
VPS39-213ENST00000570062 ERFEQ4G0M1 354 aa9.59□□□□□ -0.87
VPS39-213ENST00000570062 TSHZ3Q63HK5 1081 aa9.59□□□□□ -0.87
VPS39-213ENST00000570062 CNBD1Q8NA66 436 aa9.59□□□□□ -0.87
VPS39-213ENST00000570062 ADAM33Q9BZ11 813 aa9.59□□□□□ -0.87
VPS39-213ENST00000570062 PAG1Q9NWQ8 432 aa9.59□□□□□ -0.87
VPS39-213ENST00000570062 TFCP2L1Q9NZI6 479 aa9.59□□□□□ -0.87
VPS39-213ENST00000570062 BTAF1O14981 1849 aa9.59□□□□□ -0.88
VPS39-213ENST00000570062 ZNF609O15014 1411 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 FAM177BA6PVY3 158 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 SEMA3EO15041 775 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 FGFR2P21802 821 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 TM4SF1P30408 202 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 MCMDC2Q4G0Z9 681 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 CAVIN4Q5BKX8 364 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 CWC27Q6UX04 472 aaKnown RBP9.58□□□□□ -0.88
VPS39-213ENST00000570062 THSD4Q6ZMP0 1018 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 VGLL2Q8N8G2 317 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 PUS3Q9BZE2 481 aaKnown RBP9.58□□□□□ -0.88
VPS39-213ENST00000570062 HMG20BQ9P0W2 317 aa9.58□□□□□ -0.88
VPS39-213ENST00000570062 LY75O60449 1722 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 BBOX1O75936 387 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 PHF14O94880 888 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 GYS1P13807 737 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 PSMA5P28066 241 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 HSPA4P34932 840 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 KCNQ4P56696 695 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 KRT32Q14532 448 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 MFSD10Q14728 455 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 NFIXQ14938 502 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 BICDL1Q6ZP65 573 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 DEFB132Q7Z7B7 95 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 SYNE4Q8N205 404 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 WNT2BQ93097 391 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 RBM17Q96I25 401 aaKnown RBP9.57□□□□□ -0.88
VPS39-213ENST00000570062 CCDC85AQ96PX6 553 aaPredicted RBP9.57□□□□□ -0.88
VPS39-213ENST00000570062 TMX4Q9H1E5 349 aaPredicted RBP9.57□□□□□ -0.88
VPS39-213ENST00000570062 TLR7Q9NYK1 1049 aaKnown RBP9.57□□□□□ -0.88
VPS39-213ENST00000570062 SRP68Q9UHB9 627 aaKnown RBP9.57□□□□□ -0.88
VPS39-213ENST00000570062 ANKRD36CQ5JPF3 1778 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 CEP350Q5VT06 3117 aa9.57□□□□□ -0.88
VPS39-213ENST00000570062 RNF113AO15541 343 aaKnown RBP9.56□□□□□ -0.88
VPS39-213ENST00000570062 SERPINB2P05120 415 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 ARID4AP29374 1257 aaPredicted RBP9.56□□□□□ -0.88
VPS39-213ENST00000570062 BAG6P46379 1132 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 KCNJ4P48050 445 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 MAP4K1Q92918 833 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 CHMP4CQ96CF2 233 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 DNAJC2Q99543 621 aaKnown RBP9.56□□□□□ -0.88
VPS39-213ENST00000570062 TM6SF1Q9BZW5 370 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 NBPF3Q9H094 633 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 CTNNA3Q9UI47 895 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 LEMD3Q9Y2U8 911 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 C4BP0C0L5 1744 aa9.56□□□□□ -0.88
VPS39-213ENST00000570062 NUP98P52948 1817 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 K7ELQ4 463 aaPredicted RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 MAP4K4O95819 1239 aaPredicted RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 HMGB1P09429 215 aaKnown RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 PDIA4P13667 645 aaKnown RBP9.55□□□□□ -0.88
VPS39-213ENST00000570062 FKBP4Q02790 459 aaKnown RBP eCLIP9.55□□□□□ -0.88
VPS39-213ENST00000570062 CHRNDQ07001 517 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 MAP3K12Q12852 859 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 GRAPQ13588 217 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 TSGA10IPQ3SY00 556 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 CCDC102BQ68D86 513 aa9.55□□□□□ -0.88
VPS39-213ENST00000570062 GRAPLQ8TC17 118 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms