RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TESPA1A2RU30 521 aaPredicted RBP15.3■□□□□ 0.04
CLK3-222ENST00000568232 USP2O75604 605 aaPredicted RBP15.3■□□□□ 0.04
CLK3-222ENST00000568232 KLRK1P26718 216 aa15.3■□□□□ 0.04
CLK3-222ENST00000568232 CCT4P50991 539 aaKnown RBP15.3■□□□□ 0.04
CLK3-222ENST00000568232 GTF2IP78347 998 aa15.3■□□□□ 0.04
CLK3-222ENST00000568232 NBPF12Q5TAG4 269 aaPredicted RBP15.3■□□□□ 0.04
CLK3-222ENST00000568232 HYPKQ9NX55 129 aa15.3■□□□□ 0.04
CLK3-222ENST00000568232 CLRN2A0PK11 232 aa15.29■□□□□ 0.04
CLK3-222ENST00000568232 PCCAP05165 728 aaPredicted RBP15.29■□□□□ 0.04
CLK3-222ENST00000568232 HSP90B1P14625 803 aaKnown RBP15.29■□□□□ 0.04
CLK3-222ENST00000568232 TMPOP42166 694 aaKnown RBP15.29■□□□□ 0.04
CLK3-222ENST00000568232 DLGAP5Q15398 846 aa15.29■□□□□ 0.04
CLK3-222ENST00000568232 NEUROD2Q15784 382 aa15.29■□□□□ 0.04
CLK3-222ENST00000568232 ARHGAP39Q9C0H5 1083 aa15.29■□□□□ 0.04
CLK3-222ENST00000568232 PHAXQ9H814 394 aaKnown RBP15.29■□□□□ 0.04
CLK3-222ENST00000568232 COL1A1P02452 1464 aaPredicted RBP15.28■□□□□ 0.04
CLK3-222ENST00000568232 AOX1Q06278 1338 aa15.28■□□□□ 0.04
CLK3-222ENST00000568232 MMP14P50281 582 aa15.28■□□□□ 0.04
CLK3-222ENST00000568232 MS4A4AQ96JQ5 239 aa15.28■□□□□ 0.04
CLK3-222ENST00000568232 ELP3Q9H9T3 547 aa15.28■□□□□ 0.04
CLK3-222ENST00000568232 BSDC1Q9NW68 430 aaPredicted RBP15.28■□□□□ 0.04
CLK3-222ENST00000568232 IREB2P48200 963 aaKnown RBP15.27■□□□□ 0.04
CLK3-222ENST00000568232 TAF1CQ15572 869 aaPredicted RBP15.27■□□□□ 0.04
CLK3-222ENST00000568232 SUPT20HL1Q3ZLR7 823 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 ANKRD13AQ8IZ07 590 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 CERS5Q8N5B7 392 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 CCDC191Q8NCU4 936 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 BRI3BPQ8WY22 251 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 OPTNQ96CV9 577 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 SHISA4Q96DD7 197 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 CDC5LQ99459 802 aaKnown RBP15.27■□□□□ 0.04
CLK3-222ENST00000568232 PRO3102Q9H379 93 aa15.27■□□□□ 0.04
CLK3-222ENST00000568232 LAMB1P07942 1786 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 LAMA3Q16787 3333 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 UNCXA6NJT0 531 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 F8W031 263 aaPredicted RBP15.26■□□□□ 0.03
CLK3-222ENST00000568232 SOX1O00570 391 aaPredicted RBP15.26■□□□□ 0.03
CLK3-222ENST00000568232 ECM2O94769 699 aaPredicted RBP15.26■□□□□ 0.03
CLK3-222ENST00000568232 CTSWP56202 376 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 GOLGA2Q08379 1002 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 LMOD3Q0VAK6 560 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 ARHGEF6Q15052 776 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 MTFR1Q15390 333 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 DUSP27Q5VZP5 1158 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 PRMT6Q96LA8 375 aaPredicted RBP15.26■□□□□ 0.03
CLK3-222ENST00000568232 GREM2Q9H772 168 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 VEZTQ9HBM0 779 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 ZFYVE28Q9HCC9 887 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 CWC25Q9NXE8 425 aaPredicted RBP15.26■□□□□ 0.03
CLK3-222ENST00000568232 PPP2R3BQ9Y5P8 575 aa15.26■□□□□ 0.03
CLK3-222ENST00000568232 ZNF804BA4D1E1 1349 aa15.25■□□□□ 0.03
CLK3-222ENST00000568232 HOXB7P09629 217 aa15.25■□□□□ 0.03
CLK3-222ENST00000568232 FAM43AQ8N2R8 423 aa15.25■□□□□ 0.03
CLK3-222ENST00000568232 TTLL11Q8NHH1 800 aa15.25■□□□□ 0.03
CLK3-222ENST00000568232 CCL15-CCL14A0A0B4J2E2 113 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 RASA3Q14644 834 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 CCL15Q16663 113 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 CFAP100Q494V2 611 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 MTMR14Q8NCE2 650 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 LRCH3Q96II8 777 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 LEMD3Q9Y2U8 911 aa15.24■□□□□ 0.03
CLK3-222ENST00000568232 ZSWIM8A7E2V4 1837 aa15.23■□□□□ 0.03
CLK3-222ENST00000568232 SPDYE1Q8NFV5 336 aaPredicted RBP15.23■□□□□ 0.03
CLK3-222ENST00000568232 CD209Q9NNX6 404 aa15.23■□□□□ 0.03
CLK3-222ENST00000568232 TRIM35Q9UPQ4 493 aa15.23■□□□□ 0.03
CLK3-222ENST00000568232 SNAP23O00161 211 aa15.22■□□□□ 0.03
CLK3-222ENST00000568232 MYO1BO43795 1136 aa15.22■□□□□ 0.03
CLK3-222ENST00000568232 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.22■□□□□ 0.03
CLK3-222ENST00000568232 CDAN1Q8IWY9 1227 aa15.22■□□□□ 0.03
CLK3-222ENST00000568232 CCDC146Q8IYE0 955 aa15.22■□□□□ 0.03
CLK3-222ENST00000568232 UNC80Q8N2C7 3258 aa15.21■□□□□ 0.03
CLK3-222ENST00000568232 GTF2A2P52657 109 aa15.21■□□□□ 0.03
CLK3-222ENST00000568232 LACTBP83111 547 aaPredicted RBP15.21■□□□□ 0.03
CLK3-222ENST00000568232 UBE2Q1Q7Z7E8 422 aa15.21■□□□□ 0.03
CLK3-222ENST00000568232 METTL22Q9BUU2 404 aaPredicted RBP15.21■□□□□ 0.03
CLK3-222ENST00000568232 JAG2Q9Y219 1238 aa15.21■□□□□ 0.03
CLK3-222ENST00000568232 SPEF2Q9C093 1822 aa15.21■□□□□ 0.03
CLK3-222ENST00000568232 ELL2O00472 640 aaPredicted RBP15.2■□□□□ 0.02
CLK3-222ENST00000568232 ZBTB7BO15156 539 aaPredicted RBP15.2■□□□□ 0.02
CLK3-222ENST00000568232 CTGFP29279 349 aa15.2■□□□□ 0.02
CLK3-222ENST00000568232 MNX1P50219 401 aaPredicted RBP15.2■□□□□ 0.02
CLK3-222ENST00000568232 RBM5P52756 815 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLK3-222ENST00000568232 VGLL4Q14135 290 aa15.2■□□□□ 0.02
CLK3-222ENST00000568232 KIF22Q14807 665 aa15.2■□□□□ 0.02
CLK3-222ENST00000568232 CUL9Q8IWT3 2517 aa15.2■□□□□ 0.02
CLK3-222ENST00000568232 TLR2O60603 784 aa15.19■□□□□ 0.02
CLK3-222ENST00000568232 IGKV5-2P06315 115 aa15.19■□□□□ 0.02
CLK3-222ENST00000568232 IGHMBP2P38935 993 aaKnown RBP15.19■□□□□ 0.02
CLK3-222ENST00000568232 HTATIP2Q9BUP3 242 aa15.19■□□□□ 0.02
CLK3-222ENST00000568232 MBIPQ9NS73 344 aa15.19■□□□□ 0.02
CLK3-222ENST00000568232 OTOFQ9HC10 1997 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 KCNJ4P48050 445 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 GJA8P48165 433 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 TEPSINQ96N21 525 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 ANKRD2Q9GZV1 360 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 MAP3K2Q9Y2U5 619 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 NR2E3Q9Y5X4 410 aa15.18■□□□□ 0.02
CLK3-222ENST00000568232 IRS2Q9Y4H2 1338 aa15.17■□□□□ 0.02
CLK3-222ENST00000568232 BTBD19C9JJ37 291 aa15.17■□□□□ 0.02
CLK3-222ENST00000568232 TAF5LO75529 589 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms