RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ARTNQ5T4W7 220 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 NUTM2GQ5VZR2 741 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 RETREG2Q8NC44 543 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 BHLHE41Q9C0J9 482 aaPredicted RBP5.6□□□□□ -1.51
VPS35-207ENST00000568191 RNF112Q9ULX5 631 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 SOX13Q9UN79 622 aa5.6□□□□□ -1.51
VPS35-207ENST00000568191 TRPA1O75762 1119 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 ACPPP15309 386 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 SERPINB4P48594 390 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 KIAA1211Q6ZU35 1233 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 GALNT12Q8IXK2 581 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 GIMAP7Q8NHV1 300 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 SOX17Q9H6I2 414 aaPredicted RBP5.59□□□□□ -1.51
VPS35-207ENST00000568191 CYP4F12Q9HCS2 524 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 PPP4R2Q9NY27 417 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 KCNK4Q9NYG8 393 aa5.59□□□□□ -1.51
VPS35-207ENST00000568191 MEGF11A6BM72 1044 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 DDX3YO15523 660 aaKnown RBP5.58□□□□□ -1.52
VPS35-207ENST00000568191 CPNE3O75131 537 aaKnown RBP5.58□□□□□ -1.52
VPS35-207ENST00000568191 WISP1O95388 367 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 HNRNPUQ00839 825 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS35-207ENST00000568191 UBASH3BQ8TF42 649 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 UBL7Q96S82 380 aaPredicted RBP5.58□□□□□ -1.52
VPS35-207ENST00000568191 USP26Q9BXU7 913 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 KCNF1Q9H3M0 494 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 LIN7BQ9HAP6 207 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 HIF3AQ9Y2N7 669 aa5.58□□□□□ -1.52
VPS35-207ENST00000568191 SOX1O00570 391 aaPredicted RBP5.57□□□□□ -1.52
VPS35-207ENST00000568191 IGLV1-40P01703 118 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 CYP11A1P05108 521 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 GRIK1P39086 918 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 GSTM4Q03013 218 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 CLEC10AQ8IUN9 316 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 C12orf50Q8NA57 414 aaPredicted RBP5.57□□□□□ -1.52
VPS35-207ENST00000568191 FOXD4L4Q8WXT5 416 aaPredicted RBP5.57□□□□□ -1.52
VPS35-207ENST00000568191 FAM46AQ96IP4 442 aaKnown RBP5.57□□□□□ -1.52
VPS35-207ENST00000568191 MYRFLQ96LU7 910 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 DMRTB1Q96MA1 342 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 HHIPQ96QV1 700 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 DNAJC25Q9H1X3 360 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 EHD4Q9H223 541 aa5.57□□□□□ -1.52
VPS35-207ENST00000568191 CLEC4MQ9H2X3 399 aaPredicted RBP5.57□□□□□ -1.52
VPS35-207ENST00000568191 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.57□□□□□ -1.52
VPS35-207ENST00000568191 A0A096LPE4 126 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 A0A1W2PP55 124 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 A0A1W2PPZ6 126 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 ADAM11O75078 769 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 POLR3DP05423 398 aaPredicted RBP5.56□□□□□ -1.52
VPS35-207ENST00000568191 ESRRAP11474 423 aaPredicted RBP5.56□□□□□ -1.52
VPS35-207ENST00000568191 BMP3P12645 472 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 USP11P51784 963 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 EXOSC6Q5RKV6 272 aaKnown RBP5.56□□□□□ -1.52
VPS35-207ENST00000568191 VN1R5Q7Z5H4 357 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 TXNDC2Q86VQ3 553 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 YIPF2Q9BWQ6 316 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 PCMTD2Q9NV79 361 aa5.56□□□□□ -1.52
VPS35-207ENST00000568191 BIN2Q9UBW5 565 aaPredicted RBP5.56□□□□□ -1.52
VPS35-207ENST00000568191 GADD45BO75293 160 aaPredicted RBP5.55□□□□□ -1.52
VPS35-207ENST00000568191 BRD1O95696 1058 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 RXRBP28702 533 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 ARHGAP4P98171 946 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 PCDH1Q08174 1060 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 KIAA0319Q5VV43 1072 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 PEAR1Q5VY43 1037 aaPredicted RBP5.55□□□□□ -1.52
VPS35-207ENST00000568191 ADAMTSL4Q6UY14 1074 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 BEND4Q6ZU67 534 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 CCNJLQ8IV13 435 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 FAM20CQ8IXL6 584 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 FAM83CQ9BQN1 747 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 DBNDD2Q9BQY9 259 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 LATS2Q9NRM7 1088 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 TRAK1Q9UPV9 953 aa5.55□□□□□ -1.52
VPS35-207ENST00000568191 HYAL3O43820 417 aaPredicted RBP5.54□□□□□ -1.52
VPS35-207ENST00000568191 COBLO75128 1261 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 NFIAQ12857 509 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 RNF43Q68DV7 783 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 INTS5Q6P9B9 1019 aaKnown RBP5.54□□□□□ -1.52
VPS35-207ENST00000568191 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.54□□□□□ -1.52
VPS35-207ENST00000568191 ARMC10Q8N2F6 343 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 SMG8Q8ND04 991 aaKnown RBP5.54□□□□□ -1.52
VPS35-207ENST00000568191 FAM129BQ96TA1 746 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 NIF3L1Q9GZT8 377 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 C7orf69Q9H7B7 122 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 SUGCTQ9HAC7 445 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 RAD18Q9NS91 495 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 NLRP2Q9NX02 1062 aa5.54□□□□□ -1.52
VPS35-207ENST00000568191 LOC100289279A0A1B0GTE1 492 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 TM4SF5O14894 197 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 PREPP48147 710 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 POU4F3Q15319 338 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 PAOXQ6QHF9 649 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 TRIM42Q8IWZ5 723 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 CORO1BQ9BR76 489 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 TMPRSS13Q9BYE2 586 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 RBCK1Q9BYM8 510 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 ATG3Q9NT62 314 aa5.53□□□□□ -1.52
VPS35-207ENST00000568191 SOWAHDA6NJG2 315 aa5.52□□□□□ -1.53
VPS35-207ENST00000568191 METTL12A8MUP2 240 aa5.52□□□□□ -1.53
VPS35-207ENST00000568191 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.52□□□□□ -1.53
VPS35-207ENST00000568191 PATL2C9JE40 543 aaKnown RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms