RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 CNPY2Q9Y2B0 182 aa22.68■■□□□ 1.22
SMPD3-203ENST00000563226 ZNF532Q9HCE3 1301 aa22.68■■□□□ 1.22
SMPD3-203ENST00000563226 VPS37CA5D8V6 355 aaPredicted RBP22.67■■□□□ 1.22
SMPD3-203ENST00000563226 PDE6AP16499 860 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 BCAMP50895 628 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 ZSCAN25Q6NSZ9 544 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 CHST3Q7LGC8 479 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 GRPEL1Q9HAV7 217 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 TCRBV5S4A2TA0A5A2 114 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 GADD45BO75293 160 aaPredicted RBP22.67■■□□□ 1.22
SMPD3-203ENST00000563226 C4AP0C0L4 1744 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 C4BP0C0L5 1744 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 SF3B3Q15393 1217 aaKnown RBP22.67■■□□□ 1.22
SMPD3-203ENST00000563226 ZSCAN23Q3MJ62 389 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 USP48Q86UV5 1035 aa22.67■■□□□ 1.22
SMPD3-203ENST00000563226 CDC5LQ99459 802 aaKnown RBP22.67■■□□□ 1.22
SMPD3-203ENST00000563226 JAK2O60674 1132 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 FGD1P98174 961 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 UBE3CQ15386 1083 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 TMEM63CQ9P1W3 806 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 WTIPA6NIX2 430 aaPredicted RBP22.66■■□□□ 1.22
SMPD3-203ENST00000563226 MRE11P49959 708 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 APOBRQ0VD83 1088 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 LARP1BQ659C4 914 aaKnown RBP22.66■■□□□ 1.22
SMPD3-203ENST00000563226 AGXT2Q9BYV1 514 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 CTNNA3Q9UI47 895 aa22.66■■□□□ 1.22
SMPD3-203ENST00000563226 SCRN1Q12765 414 aa22.65■■□□□ 1.22
SMPD3-203ENST00000563226 IMMTQ16891 758 aaKnown RBP22.65■■□□□ 1.22
SMPD3-203ENST00000563226 CDC37L1Q7L3B6 337 aa22.65■■□□□ 1.22
SMPD3-203ENST00000563226 CCDC24Q8N4L8 307 aa22.65■■□□□ 1.22
SMPD3-203ENST00000563226 ISY1Q9ULR0 285 aaKnown RBP22.65■■□□□ 1.22
SMPD3-203ENST00000563226 RGL2O15211 777 aa22.64■■□□□ 1.22
SMPD3-203ENST00000563226 GTF2E1P29083 439 aaPredicted RBP22.64■■□□□ 1.22
SMPD3-203ENST00000563226 ANKRD18AQ8IVF6 992 aa22.64■■□□□ 1.22
SMPD3-203ENST00000563226 SEPT12Q8IYM1 358 aa22.64■■□□□ 1.22
SMPD3-203ENST00000563226 ARHGEF1Q92888 912 aaKnown RBP22.64■■□□□ 1.22
SMPD3-203ENST00000563226 RTCBQ9Y3I0 505 aaKnown RBP22.64■■□□□ 1.22
SMPD3-203ENST00000563226 EP400Q96L91 3159 aa22.64■■□□□ 1.21
SMPD3-203ENST00000563226 ZPR1O75312 459 aa22.64■■□□□ 1.21
SMPD3-203ENST00000563226 SLC10A5Q5PT55 438 aa22.64■■□□□ 1.21
SMPD3-203ENST00000563226 CELF1Q92879 486 aaKnown RBP22.64■■□□□ 1.21
SMPD3-203ENST00000563226 ONECUT3O60422 494 aaPredicted RBP22.63■■□□□ 1.21
SMPD3-203ENST00000563226 TMEM87AQ8NBN3 555 aa22.63■■□□□ 1.21
SMPD3-203ENST00000563226 SETDB2Q96T68 719 aa22.63■■□□□ 1.21
SMPD3-203ENST00000563226 MBD3O95983 291 aa22.62■■□□□ 1.21
SMPD3-203ENST00000563226 ZNF445P59923 1031 aa22.62■■□□□ 1.21
SMPD3-203ENST00000563226 NBPF3Q9H094 633 aa22.62■■□□□ 1.21
SMPD3-203ENST00000563226 GPHNQ9NQX3 736 aaPredicted RBP22.62■■□□□ 1.21
SMPD3-203ENST00000563226 PFKFB2O60825 505 aa22.62■■□□□ 1.21
SMPD3-203ENST00000563226 MAGEB6Q8N7X4 407 aa22.62■■□□□ 1.21
SMPD3-203ENST00000563226 DNM1Q05193 864 aaKnown RBP22.61■■□□□ 1.21
SMPD3-203ENST00000563226 FERMT3Q86UX7 667 aa22.61■■□□□ 1.21
SMPD3-203ENST00000563226 NBPF5PQ86XG9 351 aaPredicted RBP22.61■■□□□ 1.21
SMPD3-203ENST00000563226 TRPC5Q9UL62 973 aaPredicted RBP22.61■■□□□ 1.21
SMPD3-203ENST00000563226 IQSEC3Q9UPP2 1182 aaPredicted RBP22.61■■□□□ 1.21
SMPD3-203ENST00000563226 PHF14O94880 888 aa22.61■■□□□ 1.21
SMPD3-203ENST00000563226 NYXQ9GZU5 481 aa22.61■■□□□ 1.21
SMPD3-203ENST00000563226 BSDC1Q9NW68 430 aaPredicted RBP22.61■■□□□ 1.21
SMPD3-203ENST00000563226 ZNF213O14771 459 aa22.6■■□□□ 1.21
SMPD3-203ENST00000563226 FIBPO43427 364 aa22.6■■□□□ 1.21
SMPD3-203ENST00000563226 MB21D2Q8IYB1 491 aaPredicted RBP22.6■■□□□ 1.21
SMPD3-203ENST00000563226 STRBPQ96SI9 672 aaKnown RBP22.6■■□□□ 1.21
SMPD3-203ENST00000563226 MINPP1Q9UNW1 487 aa22.6■■□□□ 1.21
SMPD3-203ENST00000563226 ATP6V1DQ9Y5K8 247 aa22.6■■□□□ 1.21
SMPD3-203ENST00000563226 TNRC6CQ9HCJ0 1690 aaKnown RBP22.6■■□□□ 1.21
SMPD3-203ENST00000563226 PDCP20941 246 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 GYG1P46976 350 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 CCT2P78371 535 aaKnown RBP22.59■■□□□ 1.21
SMPD3-203ENST00000563226 NKX2-3Q8TAU0 364 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 DDX11Q96FC9 970 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 LRRC4BQ9NT99 713 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 DENND2AQ9ULE3 1009 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 COL1A1P02452 1464 aaPredicted RBP22.59■■□□□ 1.21
SMPD3-203ENST00000563226 CTDNEP1O95476 244 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 ANTXR2P58335 489 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 MAP3K12Q12852 859 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 SMARCC2Q8TAQ2 1214 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 AIDAQ96BJ3 306 aa22.59■■□□□ 1.21
SMPD3-203ENST00000563226 NCOA5Q9HCD5 579 aaKnown RBP22.59■■□□□ 1.21
SMPD3-203ENST00000563226 APPP05067 770 aa22.58■■□□□ 1.21
SMPD3-203ENST00000563226 FAM173BQ6P4H8 233 aa22.58■■□□□ 1.21
SMPD3-203ENST00000563226 FAM196AQ6ZSG2 479 aa22.58■■□□□ 1.21
SMPD3-203ENST00000563226 TBC1D10CQ8IV04 446 aa22.58■■□□□ 1.21
SMPD3-203ENST00000563226 NSUN7Q8NE18 718 aaKnown RBP22.58■■□□□ 1.21
SMPD3-203ENST00000563226 ZNF804BA4D1E1 1349 aa22.58■■□□□ 1.21
SMPD3-203ENST00000563226 MBD4O95243 580 aa22.58■■□□□ 1.2
SMPD3-203ENST00000563226 PDIA3P30101 505 aaKnown RBP22.58■■□□□ 1.2
SMPD3-203ENST00000563226 NAP1L2Q9ULW6 460 aaPredicted RBP22.58■■□□□ 1.2
SMPD3-203ENST00000563226 PRC1O43663 620 aa22.57■■□□□ 1.2
SMPD3-203ENST00000563226 TPRNQ4KMQ1 711 aa22.57■■□□□ 1.2
SMPD3-203ENST00000563226 NLRP3Q96P20 1036 aa22.57■■□□□ 1.2
SMPD3-203ENST00000563226 ARMT1Q9H993 441 aa22.57■■□□□ 1.2
SMPD3-203ENST00000563226 EPB41L4AQ9HCS5 686 aaPredicted RBP22.57■■□□□ 1.2
SMPD3-203ENST00000563226 FBXL16Q8N461 479 aa22.56■■□□□ 1.2
SMPD3-203ENST00000563226 NCOA7Q8NI08 942 aa22.56■■□□□ 1.2
SMPD3-203ENST00000563226 SYCE3A1L190 88 aa22.56■■□□□ 1.2
SMPD3-203ENST00000563226 UBE4AQ14139 1066 aa22.56■■□□□ 1.2
SMPD3-203ENST00000563226 CHD4Q14839 1912 aa22.55■■□□□ 1.2
SMPD3-203ENST00000563226 PPFIA3O75145 1194 aa22.55■■□□□ 1.2
SMPD3-203ENST00000563226 MCM5P33992 734 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms