RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 GRIK1P39086 918 aa8.18□□□□□ -1.1
VPS13C-210ENST00000561258 PREPP48147 710 aa8.18□□□□□ -1.1
VPS13C-210ENST00000561258 NOM1Q5C9Z4 860 aaKnown RBP8.18□□□□□ -1.1
VPS13C-210ENST00000561258 INTS5Q6P9B9 1019 aaKnown RBP8.18□□□□□ -1.1
VPS13C-210ENST00000561258 ATCAYQ86WG3 371 aa8.18□□□□□ -1.1
VPS13C-210ENST00000561258 CLEC10AQ8IUN9 316 aa8.18□□□□□ -1.1
VPS13C-210ENST00000561258 SHKBP1Q8TBC3 707 aa8.18□□□□□ -1.1
VPS13C-210ENST00000561258 NUDT16Q96DE0 195 aaKnown RBP8.18□□□□□ -1.1
VPS13C-210ENST00000561258 H3BRJ5 948 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 SART1O43290 800 aaKnown RBP8.17□□□□□ -1.1
VPS13C-210ENST00000561258 TRPA1O75762 1119 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 TXKP42681 527 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 NLRP12P59046 1061 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 ABTB2Q8N961 1025 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 FAM83CQ9BQN1 747 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 KCNF1Q9H3M0 494 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 SEPT3Q9UH03 358 aa8.17□□□□□ -1.1
VPS13C-210ENST00000561258 FAM177BA6PVY3 158 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 HGSNATQ68CP4 663 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 PDE12Q6L8Q7 609 aaKnown RBP8.16□□□□□ -1.1
VPS13C-210ENST00000561258 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.16□□□□□ -1.1
VPS13C-210ENST00000561258 BEND4Q6ZU67 534 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 ZNF438Q7Z4V0 828 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 DTX1Q86Y01 620 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 HHIPQ96QV1 700 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 SALL4Q9UJQ4 1053 aa8.16□□□□□ -1.1
VPS13C-210ENST00000561258 NFKBIEO00221 500 aa8.15□□□□□ -1.1
VPS13C-210ENST00000561258 PIP4K2BP78356 416 aa8.15□□□□□ -1.1
VPS13C-210ENST00000561258 C1orf127Q8N9H9 656 aa8.15□□□□□ -1.1
VPS13C-210ENST00000561258 SLC7A3Q8WY07 619 aa8.15□□□□□ -1.1
VPS13C-210ENST00000561258 IGSF3O75054 1194 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 CABP4P57796 275 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 ANKRD34AQ69YU3 496 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 RUSC1Q9BVN2 902 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 RNF208Q9H0X6 261 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 DZANK1Q9NVP4 752 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 EGFL7Q9UHF1 273 aa8.14□□□□□ -1.11
VPS13C-210ENST00000561258 KRTAP4-8A0A0G2JLE6 195 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 A6NHS1 94 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 WDR64B1ANS9 1081 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 WNT11O96014 354 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 EDEM1Q92611 657 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 WNT8BQ93098 351 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 GGNBP2Q9H3C7 697 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 OSGEPQ9NPF4 335 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 IGSF5Q9NSI5 407 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 RNF114Q9Y508 228 aa8.13□□□□□ -1.11
VPS13C-210ENST00000561258 PDE2AO00408 941 aaPredicted RBP8.12□□□□□ -1.11
VPS13C-210ENST00000561258 CES1P23141 567 aa8.12□□□□□ -1.11
VPS13C-210ENST00000561258 HOXA10P31260 410 aaPredicted RBP8.12□□□□□ -1.11
VPS13C-210ENST00000561258 FDX2Q6P4F2 183 aa8.12□□□□□ -1.11
VPS13C-210ENST00000561258 MFSD14AQ96MC6 490 aa8.12□□□□□ -1.11
VPS13C-210ENST00000561258 DNM1Q05193 864 aaKnown RBP8.11□□□□□ -1.11
VPS13C-210ENST00000561258 KIAA1522Q9P206 1035 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-210ENST00000561258 BIN2Q9UBW5 565 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-210ENST00000561258 SOX13Q9UN79 622 aa8.11□□□□□ -1.11
VPS13C-210ENST00000561258 GAS2O43903 313 aaKnown RBP8.1□□□□□ -1.11
VPS13C-210ENST00000561258 ZNF16P17020 682 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-210ENST00000561258 MAP4P27816 1152 aaKnown RBP8.1□□□□□ -1.11
VPS13C-210ENST00000561258 SGO2Q562F6 1265 aa8.1□□□□□ -1.11
VPS13C-210ENST00000561258 XKR5Q6UX68 686 aa8.1□□□□□ -1.11
VPS13C-210ENST00000561258 NPAS4Q8IUM7 802 aa8.1□□□□□ -1.11
VPS13C-210ENST00000561258 CHRDQ9H2X0 955 aa8.1□□□□□ -1.11
VPS13C-210ENST00000561258 HIF3AQ9Y2N7 669 aa8.1□□□□□ -1.11
VPS13C-210ENST00000561258 ARID1BQ8NFD5 2236 aaPredicted RBP8.1□□□□□ -1.11
VPS13C-210ENST00000561258 SOX1O00570 391 aaPredicted RBP8.09□□□□□ -1.11
VPS13C-210ENST00000561258 ICMTO60725 284 aa8.09□□□□□ -1.11
VPS13C-210ENST00000561258 C19orf57Q0VDD7 668 aa8.09□□□□□ -1.11
VPS13C-210ENST00000561258 ZNF211Q13398 564 aaPredicted RBP8.09□□□□□ -1.11
VPS13C-210ENST00000561258 C8orf34Q49A92 452 aa8.09□□□□□ -1.11
VPS13C-210ENST00000561258 BCL2L13Q9BXK5 485 aa8.09□□□□□ -1.11
VPS13C-210ENST00000561258 ADGRE2Q9UHX3 823 aa8.09□□□□□ -1.11
VPS13C-210ENST00000561258 MEGF11A6BM72 1044 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 H3BRB1 525 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 ABL1P00519 1130 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 PDGFAP04085 211 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 YBX3P16989 372 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS13C-210ENST00000561258 ARL4DP49703 201 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 SHISA5Q8N114 240 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 FBXL6Q8N531 539 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 TUT1Q9H6E5 874 aaKnown RBP8.08□□□□□ -1.12
VPS13C-210ENST00000561258 PIM2Q9P1W9 311 aa8.08□□□□□ -1.12
VPS13C-210ENST00000561258 ANKRD33BA6NCL7 494 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 F13BP05160 661 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 RPLP1P05386 114 aaKnown RBP8.07□□□□□ -1.12
VPS13C-210ENST00000561258 RXRBP28702 533 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 ECM1Q16610 540 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 TMEM102Q8N9M5 508 aaPredicted RBP8.07□□□□□ -1.12
VPS13C-210ENST00000561258 C12orf50Q8NA57 414 aaPredicted RBP8.07□□□□□ -1.12
VPS13C-210ENST00000561258 NXPE3Q969Y0 559 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 MRRFQ96E11 262 aaKnown RBP8.07□□□□□ -1.12
VPS13C-210ENST00000561258 OSMRQ99650 979 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 USP26Q9BXU7 913 aa8.07□□□□□ -1.12
VPS13C-210ENST00000561258 PCSK2P16519 638 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 NUTM2GQ5VZR2 741 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 VN1R5Q7Z5H4 357 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 HELQQ8TDG4 1101 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 GIPC2Q8TF65 315 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 ZKSCAN3Q9BRR0 538 aa8.06□□□□□ -1.12
VPS13C-210ENST00000561258 TMPRSS13Q9BYE2 586 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 199 ms