RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MAGEB6P1A0A0J9YX57 407 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 GSPT1P15170 499 aaKnown RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 PSMA5P28066 241 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 CCDC96Q2M329 555 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 DALRD3Q5D0E6 543 aaKnown RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 AMIGO3Q86WK7 504 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 TGFBRAP1Q8WUH2 860 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 USP42Q9H9J4 1324 aaKnown RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 TCP10L2B9ZVM9 353 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 RGL2O15211 777 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 MYO1BO43795 1136 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 LDHCP07864 332 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 DPEP1P16444 411 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 CHMP4BP1P59074 171 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 TRIM29Q14134 588 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 TTF1Q15361 905 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 MINPP1Q9UNW1 487 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 U3KPZ7 1027 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 BCL9O00512 1426 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 ATRNO75882 1429 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 GPAA1O43292 621 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 CHMLP26374 656 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 MCMDC2Q4G0Z9 681 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 BRF1Q92994 677 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 ESYT1Q9BSJ8 1104 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 CRNKL1Q9BZJ0 848 aaKnown RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 COPRSQ9NQ92 184 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 CTNNA3Q9UI47 895 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 ZBTB12Q9Y330 459 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 A0A0D9SFI3 127 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 RNF113AO15541 343 aaKnown RBP6.44□□□□□ -1.38
VPS13C-209ENST00000560637 KLRK1P26718 216 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 PRDX5P30044 214 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 DYNLL1P63167 89 aaKnown RBP6.44□□□□□ -1.38
VPS13C-209ENST00000560637 GRAPQ13588 217 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 SLC51AQ86UW1 340 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 GRAPLQ8TC17 118 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-209ENST00000560637 PIM2Q9P1W9 311 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 HDAC9Q9UKV0 1011 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 TNS2Q63HR2 1409 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 MYOM1P52179 1685 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 MROH5Q6ZUA9 1318 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 CTDSPL2Q05D32 466 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 SCARF1Q14162 830 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 RAB3GAP1Q15042 981 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 SPTY2D1Q68D10 685 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-209ENST00000560637 CARMIL3Q8ND23 1372 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 PIK3C2AO00443 1686 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 BCL9LQ86UU0 1499 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 NTSR2O95665 410 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 LMOD1P29536 600 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-209ENST00000560637 FOXO4P98177 505 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 RASGRF1Q13972 1273 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 MFSD6Q6ZSS7 791 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 ZNF34Q8IZ26 560 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 MASTLQ96GX5 879 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 DENND2AQ9ULE3 1009 aa6.44□□□□□ -1.38
VPS13C-209ENST00000560637 RNF123Q5XPI4 1314 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 CYP2D7A0A087X1C5 515 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 FAM196BA6NMK8 535 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 PRKAB2O43741 272 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 DDR1Q08345 913 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 MKRN3Q13064 507 aaKnown RBP6.43□□□□□ -1.38
VPS13C-209ENST00000560637 MYL10Q9BUA6 226 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 XDHP47989 1333 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 B4E1Z4 1266 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 FIBPO43427 364 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 NPR1P16066 1061 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 GPSM2P81274 684 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 TMEM67Q5HYA8 995 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 RNF181Q9P0P0 153 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 hCG_1642624A0A1W2PR95 340 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 GOLGA8BA8MQT2 603 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 BBOX1O75936 387 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 DLGAP5Q15398 846 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 C8orf34Q49A92 452 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 TBC1D10BQ4KMP7 808 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-209ENST00000560637 FAM47AQ5JRC9 791 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 PRAMEF18Q5VWM3 479 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 IQCA1Q86XH1 822 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 KBTBD3Q8NAB2 608 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 KAZALD1Q96I82 304 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 USP40Q9NVE5 1235 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 HMG20BQ9P0W2 317 aa6.43□□□□□ -1.38
VPS13C-209ENST00000560637 HLA-DOAP06340 250 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 TSPY3P0CV98 308 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 TSPY8P0CW00 308 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 PDE6AP16499 860 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 RABEP1Q15276 862 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 RC3H1Q5TC82 1133 aaKnown RBP6.42□□□□□ -1.38
VPS13C-209ENST00000560637 SLF2Q8IX21 1173 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 TTC41PQ6P2S7 1318 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 KDM2BQ8NHM5 1336 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 USP17L12C9JPN9 530 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 USP17L21D6R901 530 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 ATP2B4P23634 1241 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 MCAMP43121 646 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 PTH1RQ03431 593 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 CCDC93Q567U6 631 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 MIGA2Q7L4E1 593 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms