RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OSBP2Q969R2 916 aa15□□□□□ -0.01
SHMT2-229ENST00000557348 ZMYND15Q9H091 742 aa15□□□□□ -0.01
SHMT2-229ENST00000557348 ZMYM6O95789 1325 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 PDS5AQ29RF7 1337 aaKnown RBP14.99□□□□□ -0.01
SHMT2-229ENST00000557348 WDR33Q9C0J8 1336 aaKnown RBP14.99□□□□□ -0.01
SHMT2-229ENST00000557348 CYP21A2P08686 494 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 MCM5P33992 734 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 SLC9C2Q5TAH2 1124 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 CNBD1Q8NA66 436 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 HELBQ8NG08 1087 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-229ENST00000557348 SMC3Q9UQE7 1217 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 ZNF804BA4D1E1 1349 aa14.99□□□□□ -0.01
SHMT2-229ENST00000557348 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.98□□□□□ -0.01
SHMT2-229ENST00000557348 PLSCR1O15162 318 aa14.98□□□□□ -0.01
SHMT2-229ENST00000557348 IDH1O75874 414 aaKnown RBP14.98□□□□□ -0.01
SHMT2-229ENST00000557348 NOL8Q76FK4 1167 aaKnown RBP14.98□□□□□ -0.01
SHMT2-229ENST00000557348 ZSCAN30Q86W11 494 aa14.98□□□□□ -0.01
SHMT2-229ENST00000557348 LRRC4BQ9NT99 713 aa14.98□□□□□ -0.01
SHMT2-229ENST00000557348 M0R2C6 588 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 GPAA1O43292 621 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 PHF14O94880 888 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 BRD1O95696 1058 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 GNAT2P19087 354 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 ST5P78524 1137 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 RASGRF1Q13972 1273 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 FLAD1Q8NFF5 587 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 MINPP1Q9UNW1 487 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 ATP6V1DQ9Y5K8 247 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 OFD1O75665 1012 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 TRIM37O94972 964 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 PDE6AP16499 860 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 PDCP20941 246 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 NFIXQ14938 502 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 DHX32Q7L7V1 743 aaKnown RBP14.97□□□□□ -0.01
SHMT2-229ENST00000557348 FBXL16Q8N461 479 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 DENND2AQ9ULE3 1009 aa14.97□□□□□ -0.01
SHMT2-229ENST00000557348 AKAP11Q9UKA4 1901 aa14.96□□□□□ -0.01
SHMT2-229ENST00000557348 MYH7P12883 1935 aa14.96□□□□□ -0.01
SHMT2-229ENST00000557348 BAG4O95429 457 aaKnown RBP14.96□□□□□ -0.01
SHMT2-229ENST00000557348 VPS37DQ86XT2 251 aa14.96□□□□□ -0.01
SHMT2-229ENST00000557348 AIDAQ96BJ3 306 aa14.96□□□□□ -0.01
SHMT2-229ENST00000557348 PIH1D3Q9NQM4 214 aaKnown RBP14.96□□□□□ -0.01
SHMT2-229ENST00000557348 WDR19Q8NEZ3 1342 aa14.96□□□□□ -0.02
SHMT2-229ENST00000557348 UBR3Q6ZT12 1888 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 FGD1P98174 961 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 ALX1Q15699 326 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 TXNRD1Q16881 649 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 PI16Q6UXB8 463 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 KIF3AQ9Y496 699 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 ZNF532Q9HCE3 1301 aa14.95□□□□□ -0.02
SHMT2-229ENST00000557348 GYS1P13807 737 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 GRAPQ13588 217 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 CSPP1Q1MSJ5 1256 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 C3orf67Q6ZVT6 689 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 KLHL34Q8N239 644 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 GRAPLQ8TC17 118 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-229ENST00000557348 CELF1Q92879 486 aaKnown RBP14.94□□□□□ -0.02
SHMT2-229ENST00000557348 AGXT2Q9BYV1 514 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 PANK2Q9BZ23 570 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 PUS7LQ9H0K6 701 aaKnown RBP14.94□□□□□ -0.02
SHMT2-229ENST00000557348 DOCK2Q92608 1830 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 PNPLA7Q6ZV29 1317 aa14.94□□□□□ -0.02
SHMT2-229ENST00000557348 TCRBV5S4A2TA0A5A2 114 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 E7EWF7 191 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 ZNF213O14771 459 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 CPA1P15085 419 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 BCAMP50895 628 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 TOB2Q14106 344 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-229ENST00000557348 ME3Q16798 604 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 KLHL40Q2TBA0 621 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 TMC4Q7Z404 712 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 NACAP1Q9BZK3 213 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 LRP2BPQ9P2M1 347 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 LEMD3Q9Y2U8 911 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 FGAP02671 866 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 TRDNQ13061 729 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 RALYLQ86SE5 291 aaKnown RBP14.93□□□□□ -0.02
SHMT2-229ENST00000557348 AMIGO3Q86WK7 504 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 CCDC83Q8IWF9 413 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 NCOA7Q8NI08 942 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 RPGRQ92834 1020 aaKnown RBP14.93□□□□□ -0.02
SHMT2-229ENST00000557348 LLPHQ9BRT6 129 aaKnown RBP14.93□□□□□ -0.02
SHMT2-229ENST00000557348 TPCN1Q9ULQ1 816 aa14.93□□□□□ -0.02
SHMT2-229ENST00000557348 A0A1B0GUL6 1792 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 CHGBP05060 677 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 TM4SF1P30408 202 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 ZNF445P59923 1031 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 EXOSC10Q01780 885 aaKnown RBP14.92□□□□□ -0.02
SHMT2-229ENST00000557348 CRY2Q49AN0 593 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 PRR5LQ6MZQ0 368 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 FBXO33Q7Z6M2 555 aa14.92□□□□□ -0.02
SHMT2-229ENST00000557348 STX6O43752 255 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 MSNP26038 577 aaKnown RBP14.91□□□□□ -0.02
SHMT2-229ENST00000557348 Q6ZUG5 572 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 NLGN1Q8N2Q7 840 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 MAGEB6Q8N7X4 407 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 RBM17Q96I25 401 aaKnown RBP14.91□□□□□ -0.02
SHMT2-229ENST00000557348 WWC3Q9ULE0 1092 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 ZDHHC9Q9Y397 364 aa14.91□□□□□ -0.02
SHMT2-229ENST00000557348 XDHP47989 1333 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms