RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 GPR108Q9NPR9 543 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 RIC1Q4ADV7 1423 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 PARP10Q53GL7 1025 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 CDC37L1Q7L3B6 337 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 FNBP4Q8N3X1 1017 aaPredicted RBP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 VGLL2Q8N8G2 317 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 INTS4Q96HW7 963 aaKnown RBP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 ARMT1Q9H993 441 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 RAI14Q9P0K7 980 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 MYH14Q7Z406 1995 aaKnown RBP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 PRKAB2O43741 272 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 ABCB7O75027 752 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 IMMTQ16891 758 aaKnown RBP7.03□□□□□ -1.28
SYNE2-225ENST00000557060 USP48Q86UV5 1035 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 FAM184AQ8NB25 1140 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 HELLSQ9NRZ9 838 aa7.03□□□□□ -1.28
SYNE2-225ENST00000557060 TUBGCP6Q96RT7 1819 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 LRP6O75581 1613 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 TJP1Q07157 1748 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.02□□□□□ -1.29
SYNE2-225ENST00000557060 ZNF213O14771 459 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 MBD4O95243 580 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 ZSCAN22P10073 491 aaPredicted RBP7.02□□□□□ -1.29
SYNE2-225ENST00000557060 PDE6AP16499 860 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 RALYLQ86SE5 291 aaKnown RBP7.02□□□□□ -1.29
SYNE2-225ENST00000557060 CCDC82Q8N4S0 544 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 APPBP2Q92624 585 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 ZKSCAN3Q9BRR0 538 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 LRRC4BQ9NT99 713 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 NUP188Q5SRE5 1749 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 MROH5Q6ZUA9 1318 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 H3BQV1 296 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 SMIM22K7EJ46 135 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 KRT32Q14532 448 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 TRAPPC3LQ5T215 181 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 IFFO2Q5TF58 517 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 NLRP3Q96P20 1036 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 CDC5LQ99459 802 aaKnown RBP7.02□□□□□ -1.29
SYNE2-225ENST00000557060 MYL10Q9BUA6 226 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 TM6SF1Q9BZW5 370 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 BCL2L12Q9HB09 334 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 ABCC12Q96J65 1359 aa7.02□□□□□ -1.29
SYNE2-225ENST00000557060 RPAP1Q9BWH6 1393 aaPredicted RBP7.02□□□□□ -1.29
SYNE2-225ENST00000557060 PAPPAQ13219 1627 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 MINDY4BA8MYZ0 360 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 CTDSPL2Q05D32 466 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 SCRN1Q12765 414 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 KLHL40Q2TBA0 621 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 SKOR2Q2VWA4 1001 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-225ENST00000557060 LRRFIP1Q32MZ4 808 aaKnown RBP7.01□□□□□ -1.29
SYNE2-225ENST00000557060 ZSCAN23Q3MJ62 389 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 OTUD7BQ6GQQ9 843 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 DHX32Q7L7V1 743 aaKnown RBP7.01□□□□□ -1.29
SYNE2-225ENST00000557060 NKX2-3Q8TAU0 364 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 SDR42E1Q8WUS8 393 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 GRPEL1Q9HAV7 217 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 SH2B1Q9NRF2 756 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-225ENST00000557060 GJB4Q9NTQ9 266 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 TMEM63CQ9P1W3 806 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 ANKIB1Q9P2G1 1089 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 FBXO3Q9UK99 471 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 B4E1Z4 1266 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 FOXP2O15409 715 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 F13A1P00488 732 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 TDO2P48775 406 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 MAP3K12Q12852 859 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 ANKRD1Q15327 319 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 TPTE2Q6XPS3 522 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 ZSCAN31Q96LW9 406 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-225ENST00000557060 ADD2P35612 726 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 TRDNQ13061 729 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 MPNDQ8N594 471 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 MTMR6Q9Y217 621 aa7.01□□□□□ -1.29
SYNE2-225ENST00000557060 NUP98P52948 1817 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 EPB41L2O43491 1005 aaKnown RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 PRC1O43663 620 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 RPS6KA4O75676 772 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 MICU3Q86XE3 530 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 DSCC1Q9BVC3 393 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 NAPBQ9H115 298 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 NARFQ9UHQ1 456 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 TRPC5Q9UL62 973 aaPredicted RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 MINPP1Q9UNW1 487 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 TNKS1BP1Q9C0C2 1729 aaKnown RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 TAF1P21675 1872 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 CYP2D7A0A087X1C5 515 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 KLF18A0A0U1RQI7 1052 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 GOLGA8BA8MQT2 603 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 PRDM1O75626 825 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 ZFYP08048 801 aaPredicted RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 CYP7A1P22680 504 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 RPS8P62241 208 aaKnown RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 TTF1Q15361 905 aaPredicted RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 CAVIN4Q5BKX8 364 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 L1TD1Q5T7N2 865 aaKnown RBP7□□□□□ -1.29
SYNE2-225ENST00000557060 NFXL1Q6ZNB6 911 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 TXNRD3Q86VQ6 643 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 PROM2Q8N271 834 aa7□□□□□ -1.29
SYNE2-225ENST00000557060 LCORLQ8N3X6 602 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms