RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 PGBD3Q8N328 593 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 CALR3Q96L12 384 aaKnown RBP6.94□□□□□ -1.3
ATXN3-239ENST00000556315 RUBCNLQ9H714 662 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 ATXN7L1Q9ULK2 861 aaPredicted RBP6.94□□□□□ -1.3
ATXN3-239ENST00000556315 PNPLA7Q6ZV29 1317 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 PHRF1Q9P1Y6 1649 aaKnown RBP6.94□□□□□ -1.3
ATXN3-239ENST00000556315 HMGB2P26583 209 aaKnown RBP6.93□□□□□ -1.3
ATXN3-239ENST00000556315 SCNN1DP51172 638 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 SNRPNP63162 240 aaKnown RBP6.93□□□□□ -1.3
ATXN3-239ENST00000556315 TLR1Q15399 786 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 EFHC2Q5JST6 749 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 GALNT6Q8NCL4 622 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 GLMNQ92990 594 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 SPOCK3Q9BQ16 436 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 CD2APQ9Y5K6 639 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 TTC21AQ8NDW8 1320 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 ATP10DQ9P241 1426 aa6.93□□□□□ -1.3
ATXN3-239ENST00000556315 RGPD3A6NKT7 1758 aaPredicted RBP6.92□□□□□ -1.3
ATXN3-239ENST00000556315 RGPD4Q7Z3J3 1758 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 C2CD2LO14523 706 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 BNIP3LO60238 219 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 PROCP04070 461 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 INHAP05111 366 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 OXLD1Q5BKU9 147 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 HDGFL1Q5TGJ6 251 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 GOLGA6L1Q8N7Z2 621 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 DDX54Q8TDD1 881 aaKnown RBP6.92□□□□□ -1.3
ATXN3-239ENST00000556315 EDARADDQ8WWZ3 215 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 CCDC97Q96F63 343 aaPredicted RBP6.92□□□□□ -1.3
ATXN3-239ENST00000556315 ALG2Q9H553 416 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 EVC2Q86UK5 1308 aa6.92□□□□□ -1.3
ATXN3-239ENST00000556315 CPSF1Q10570 1443 aaKnown RBP6.92□□□□□ -1.3
ATXN3-239ENST00000556315 HOXB4P17483 251 aaPredicted RBP6.91□□□□□ -1.3
ATXN3-239ENST00000556315 FGFR3P22607 806 aa6.91□□□□□ -1.3
ATXN3-239ENST00000556315 MAP7D1Q3KQU3 841 aa6.91□□□□□ -1.3
ATXN3-239ENST00000556315 COL23A1Q86Y22 540 aaPredicted RBP6.91□□□□□ -1.3
ATXN3-239ENST00000556315 ABHD17AQ96GS6 310 aa6.91□□□□□ -1.3
ATXN3-239ENST00000556315 DNAAF2Q9NVR5 837 aaKnown RBP6.91□□□□□ -1.3
ATXN3-239ENST00000556315 SERPINA10Q9UK55 444 aa6.91□□□□□ -1.3
ATXN3-239ENST00000556315 TNS2Q63HR2 1409 aa6.91□□□□□ -1.3
ATXN3-239ENST00000556315 SLIT3O75094 1523 aa6.91□□□□□ -1.3
ATXN3-239ENST00000556315 GDF10P55107 478 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 KCNQ4P56696 695 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 CTBSQ01459 385 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 SLCO4C1Q6ZQN7 724 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 ALYREFQ86V81 257 aaKnown RBP6.9□□□□□ -1.3
ATXN3-239ENST00000556315 ZNF295-AS1Q8N0V1 137 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 DNAJC5GQ8N7S2 189 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 FLAD1Q8NFF5 587 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 C1orf216Q8TAB5 229 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 ANKRD24Q8TF21 1146 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 ZNF526Q8TF50 670 aaPredicted RBP6.9□□□□□ -1.3
ATXN3-239ENST00000556315 SYTL4Q96C24 671 aaPredicted RBP6.9□□□□□ -1.3
ATXN3-239ENST00000556315 C1orf115Q9H7X2 142 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 MKL2Q9ULH7 1088 aa6.9□□□□□ -1.3
ATXN3-239ENST00000556315 RAB3GAP2Q9H2M9 1393 aa6.9□□□□□ -1.31
ATXN3-239ENST00000556315 LRRC37A3O60309 1634 aa6.9□□□□□ -1.31
ATXN3-239ENST00000556315 KRBA1A5PL33 1030 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 ADAM23O75077 832 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 BMP4P12644 408 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 ATP4AP20648 1035 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 COL8A1P27658 744 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 LINC00114Q6XXX2 140 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 TBC1D9Q6ZT07 1266 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 NLRP8Q86W28 1048 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 PLPP7Q8NBV4 271 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 ADAMTS19Q8TE59 1207 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 CCNL1Q9UK58 526 aaPredicted RBP6.89□□□□□ -1.31
ATXN3-239ENST00000556315 ITSN1Q15811 1721 aa6.89□□□□□ -1.31
ATXN3-239ENST00000556315 TOMM70O94826 608 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 PLA2G4AP47712 749 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 SMTNP53814 917 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 MSL1Q68DK7 614 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 FIGNL1Q6PIW4 674 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.88□□□□□ -1.31
ATXN3-239ENST00000556315 CCDC82Q8N4S0 544 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 ZCRB1Q8TBF4 217 aaKnown RBP6.88□□□□□ -1.31
ATXN3-239ENST00000556315 SLC4A9Q96Q91 983 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 NIFKQ9BYG3 293 aaKnown RBP6.88□□□□□ -1.31
ATXN3-239ENST00000556315 ZCCHC2Q9C0B9 1178 aaKnown RBP6.88□□□□□ -1.31
ATXN3-239ENST00000556315 GGA1Q9UJY5 639 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 PCDHGC4Q9Y5F7 938 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 CHD4Q14839 1912 aa6.88□□□□□ -1.31
ATXN3-239ENST00000556315 SBF2Q86WG5 1849 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 ADCY9O60503 1353 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 USP31Q70CQ4 1352 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 KTN1Q86UP2 1357 aaKnown RBP6.87□□□□□ -1.31
ATXN3-239ENST00000556315 TMEM229AB2RXF0 380 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 ARAFP10398 606 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 MTFR1Q15390 333 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 IP6K1Q92551 441 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 HCN2Q9UL51 889 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 IQSEC3Q9UPP2 1182 aaPredicted RBP6.87□□□□□ -1.31
ATXN3-239ENST00000556315 SHANK3Q9BYB0 1731 aa6.87□□□□□ -1.31
ATXN3-239ENST00000556315 ANKRD36BQ8N2N9 1353 aa6.86□□□□□ -1.31
ATXN3-239ENST00000556315 EPXP11678 715 aa6.86□□□□□ -1.31
ATXN3-239ENST00000556315 NME9Q86XW9 330 aa6.86□□□□□ -1.31
ATXN3-239ENST00000556315 LTV1Q96GA3 475 aaPredicted RBP6.86□□□□□ -1.31
ATXN3-239ENST00000556315 BTBD6Q96KE9 485 aa6.86□□□□□ -1.31
ATXN3-239ENST00000556315 COL18A1P39060 1754 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms