RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 GAS2L2Q8NHY3 880 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 RHBDD1Q8TEB9 315 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 KLRG1Q96E93 195 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 PLEKHF1Q96S99 279 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 MARF1Q9Y4F3 1742 aaKnown RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 JCADQ9P266 1359 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 COL3A1P02461 1466 aaPredicted RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 MED1Q15648 1581 aaPredicted RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 IGSF1Q8N6C5 1336 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 NFAT5O94916 1531 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 ABCC6O95255 1503 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 PHRF1Q9P1Y6 1649 aaKnown RBP6.51□□□□□ -1.37
VTI1B-202ENST00000553619 TATP17735 454 aaPredicted RBP6.51□□□□□ -1.37
VTI1B-202ENST00000553619 PLA2G4AP47712 749 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 SCNN1DP51172 638 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 NFE2L2Q16236 605 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 PGBD3Q8N328 593 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 RTF1Q92541 710 aaKnown RBP6.51□□□□□ -1.37
VTI1B-202ENST00000553619 ABHD17AQ96GS6 310 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 NLRP2Q9NX02 1062 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 PHF24Q9UPV7 400 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 KIAA0232Q92628 1395 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 SHPRHQ149N8 1683 aa6.51□□□□□ -1.37
VTI1B-202ENST00000553619 SPATA31A6Q5VVP1 1343 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 FAM83GA6ND36 823 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 E9PSI1 815 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 GDF10P55107 478 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 FLIIQ13045 1269 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 LBRQ14739 615 aaKnown RBP6.5□□□□□ -1.37
VTI1B-202ENST00000553619 CHRNA2Q15822 529 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 EFHC2Q5JST6 749 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 NBPF6Q5VWK0 638 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 TOM1L2Q6ZVM7 507 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 RAPGEF4Q8WZA2 1011 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 NBPF4Q96M43 638 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 SPOCK3Q9BQ16 436 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 MYH16Q9H6N6 1097 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 SPG7Q9UQ90 795 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 IL16Q14005 1332 aa6.5□□□□□ -1.37
VTI1B-202ENST00000553619 KDRP35968 1356 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 PLEKHG2Q9H7P9 1386 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 C2CD2LO14523 706 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 BNIP3LO60238 219 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 ATP4AP20648 1035 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 MAP7D1Q3KQU3 841 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 C1orf141Q5JVX7 400 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 GALNT6Q8NCL4 622 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 CARD10Q9BWT7 1032 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 CRISPLD1Q9H336 500 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 NDFIP2Q9NV92 336 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 ATXN7L1Q9ULK2 861 aaPredicted RBP6.49□□□□□ -1.37
VTI1B-202ENST00000553619 PEAK1Q9H792 1746 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 COL22A1Q8NFW1 1626 aaPredicted RBP6.49□□□□□ -1.37
VTI1B-202ENST00000553619 RGPD5Q99666 1765 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 WDR17Q8IZU2 1322 aa6.49□□□□□ -1.37
VTI1B-202ENST00000553619 GNAT3A8MTJ3 354 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 MSTNO14793 375 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 PROCP04070 461 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 INHAP05111 366 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 HSP90AB1P08238 724 aaKnown RBP6.48□□□□□ -1.37
VTI1B-202ENST00000553619 BMP4P12644 408 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 FGFR3P22607 806 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 GNAI1P63096 354 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 CTBSQ01459 385 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 SLFN5Q08AF3 891 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 MEX3CQ5U5Q3 659 aaKnown RBP6.48□□□□□ -1.37
VTI1B-202ENST00000553619 TBC1D9Q6ZT07 1266 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 PLPP7Q8NBV4 271 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 NGLY1Q96IV0 654 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 PHACTR3Q96KR7 559 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 CHMP4AQ9BY43 222 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 STRN4Q9NRL3 753 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 DNAAF2Q9NVR5 837 aaKnown RBP6.48□□□□□ -1.37
VTI1B-202ENST00000553619 BTG4Q9NY30 223 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 GDF2Q9UK05 429 aaPredicted RBP6.48□□□□□ -1.37
VTI1B-202ENST00000553619 THRAP3Q9Y2W1 955 aaKnown RBP6.48□□□□□ -1.37
VTI1B-202ENST00000553619 RRP7AQ9Y3A4 280 aaKnown RBP6.48□□□□□ -1.37
VTI1B-202ENST00000553619 COL18A1P39060 1754 aa6.48□□□□□ -1.37
VTI1B-202ENST00000553619 CRYBG1Q9Y4K1 1723 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 COL16A1Q07092 1604 aaPredicted RBP6.47□□□□□ -1.37
VTI1B-202ENST00000553619 COL14A1Q05707 1796 aaKnown RBP6.47□□□□□ -1.37
VTI1B-202ENST00000553619 FAM208AQ9UK61 1670 aaKnown RBP6.47□□□□□ -1.37
VTI1B-202ENST00000553619 HSPA1LP34931 641 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 MTHFSDQ2M296 383 aaKnown RBP6.47□□□□□ -1.37
VTI1B-202ENST00000553619 AKAP4Q5JQC9 854 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 AEBP1Q8IUX7 1158 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 GOLGA6L1Q8N7Z2 621 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 EDARADDQ8WWZ3 215 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 BABAM1Q9NWV8 329 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 RGPD1P0DJD0 1748 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 ZNF521Q96K83 1311 aa6.47□□□□□ -1.37
VTI1B-202ENST00000553619 CT47B1P0C2W7 299 aaPredicted RBP6.46□□□□□ -1.38
VTI1B-202ENST00000553619 IL2RBP14784 551 aa6.46□□□□□ -1.38
VTI1B-202ENST00000553619 EML3Q32P44 896 aa6.46□□□□□ -1.38
VTI1B-202ENST00000553619 SLCO4C1Q6ZQN7 724 aa6.46□□□□□ -1.38
VTI1B-202ENST00000553619 UNC5CLQ8IV45 518 aa6.46□□□□□ -1.38
VTI1B-202ENST00000553619 TRMT2AQ8IZ69 625 aaKnown RBP6.46□□□□□ -1.38
VTI1B-202ENST00000553619 IFNL2Q8IZJ0 200 aa6.46□□□□□ -1.38
VTI1B-202ENST00000553619 ZNF295-AS1Q8N0V1 137 aa6.46□□□□□ -1.38
VTI1B-202ENST00000553619 USHBP1Q8N6Y0 703 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms