RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 HOXA10P31260 410 aaPredicted RBP9.73□□□□□ -0.85
ATXN3-219ENST00000553488 SLC19A1P41440 591 aa9.73□□□□□ -0.85
ATXN3-219ENST00000553488 EPS15P42566 896 aa9.73□□□□□ -0.85
ATXN3-219ENST00000553488 RGS19P49795 217 aa9.73□□□□□ -0.85
ATXN3-219ENST00000553488 CST9Q5W186 159 aa9.73□□□□□ -0.85
ATXN3-219ENST00000553488 CYP4F22Q6NT55 531 aa9.73□□□□□ -0.85
ATXN3-219ENST00000553488 RSBN1LQ6PCB5 846 aaPredicted RBP9.73□□□□□ -0.85
ATXN3-219ENST00000553488 UBN2Q6ZU65 1347 aa9.73□□□□□ -0.85
ATXN3-219ENST00000553488 DUOX1Q9NRD9 1551 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 POLR2AP24928 1970 aaKnown RBP9.72□□□□□ -0.85
ATXN3-219ENST00000553488 TRAF5O00463 557 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 SPRYD7Q5W111 196 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 CC2D2BQ6DHV5 1058 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 RETREG3Q86VR2 466 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 JDP2Q8WYK2 163 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 FCF1Q9Y324 198 aaKnown RBP9.72□□□□□ -0.85
ATXN3-219ENST00000553488 TLL2Q9Y6L7 1015 aa9.72□□□□□ -0.85
ATXN3-219ENST00000553488 LMOD1P29536 600 aaPredicted RBP9.71□□□□□ -0.86
ATXN3-219ENST00000553488 ECE1P42892 770 aa9.71□□□□□ -0.86
ATXN3-219ENST00000553488 EIF6P56537 245 aaKnown RBP9.71□□□□□ -0.86
ATXN3-219ENST00000553488 DCTN1Q14203 1278 aa9.71□□□□□ -0.86
ATXN3-219ENST00000553488 MYSM1Q5VVJ2 828 aa9.71□□□□□ -0.86
ATXN3-219ENST00000553488 USP50Q70EL3 339 aaPredicted RBP9.71□□□□□ -0.86
ATXN3-219ENST00000553488 IRX2Q9BZI1 471 aaPredicted RBP9.71□□□□□ -0.86
ATXN3-219ENST00000553488 NYXQ9GZU5 481 aa9.71□□□□□ -0.86
ATXN3-219ENST00000553488 GJA3Q9Y6H8 435 aa9.71□□□□□ -0.86
ATXN3-219ENST00000553488 MAP3K15Q6ZN16 1313 aa9.71□□□□□ -0.86
ATXN3-219ENST00000553488 ERVV-1B6SEH8 477 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 AOC2O75106 756 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 NTSR2O95665 410 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 TUSC1Q2TAM9 212 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 TRIM67Q6ZTA4 783 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 LARGE2Q8N3Y3 721 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 GPR101Q96P66 508 aaPredicted RBP9.7□□□□□ -0.86
ATXN3-219ENST00000553488 KDM4CQ9H3R0 1056 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 PCDHB15Q9Y5E8 787 aa9.7□□□□□ -0.86
ATXN3-219ENST00000553488 DDX60Q8IY21 1712 aaKnown RBP9.7□□□□□ -0.86
ATXN3-219ENST00000553488 HTATSF1O43719 755 aaKnown RBP9.69□□□□□ -0.86
ATXN3-219ENST00000553488 MLLT1Q03111 559 aaPredicted RBP9.69□□□□□ -0.86
ATXN3-219ENST00000553488 TTLL7Q6ZT98 887 aa9.69□□□□□ -0.86
ATXN3-219ENST00000553488 SAPCD2Q86UD0 394 aa9.69□□□□□ -0.86
ATXN3-219ENST00000553488 ZNF598Q86UK7 904 aaKnown RBP9.69□□□□□ -0.86
ATXN3-219ENST00000553488 RTF1Q92541 710 aaKnown RBP9.69□□□□□ -0.86
ATXN3-219ENST00000553488 RPGRQ92834 1020 aaKnown RBP9.69□□□□□ -0.86
ATXN3-219ENST00000553488 CRAMP1Q96RY5 1269 aa9.69□□□□□ -0.86
ATXN3-219ENST00000553488 GPRC5DQ9NZD1 345 aa9.69□□□□□ -0.86
ATXN3-219ENST00000553488 AKAP11Q9UKA4 1901 aa9.69□□□□□ -0.86
ATXN3-219ENST00000553488 HTTP42858 3142 aa9.69□□□□□ -0.86
ATXN3-219ENST00000553488 MKI67P46013 3256 aaKnown RBP9.68□□□□□ -0.86
ATXN3-219ENST00000553488 CCDC85CA6NKD9 419 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 JUNDP17535 347 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 GTF2E1P29083 439 aaPredicted RBP9.68□□□□□ -0.86
ATXN3-219ENST00000553488 MAP2K2P36507 400 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 RPIAP49247 311 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 GRM1Q13255 1194 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 CNGB1Q14028 1251 aaPredicted RBP9.68□□□□□ -0.86
ATXN3-219ENST00000553488 SUSD4Q5VX71 490 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 RIC3Q7Z5B4 369 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 NIM1KQ8IY84 436 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 ZNF34Q8IZ26 560 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 HHIPL1Q96JK4 782 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 CFAP53Q96M91 514 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 ADARB2Q9NS39 739 aaKnown RBP9.68□□□□□ -0.86
ATXN3-219ENST00000553488 SCN9AQ15858 1988 aa9.68□□□□□ -0.86
ATXN3-219ENST00000553488 COL4A1P02462 1669 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 ABCC4O15439 1325 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 CDHR2Q9BYE9 1310 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 PPIP5K2O43314 1243 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 U2AF1L5P0DN76 240 aaPredicted RBP9.67□□□□□ -0.86
ATXN3-219ENST00000553488 GPTP24298 496 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 BRPF1P55201 1214 aaPredicted RBP9.67□□□□□ -0.86
ATXN3-219ENST00000553488 U2AF1Q01081 240 aaKnown RBP eCLIP9.67□□□□□ -0.86
ATXN3-219ENST00000553488 CXCL9Q07325 125 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 MTMR2Q13614 643 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 TAF7Q15545 349 aaPredicted RBP9.67□□□□□ -0.86
ATXN3-219ENST00000553488 AOC3Q16853 763 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 LRP10Q7Z4F1 713 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 RTFDC1Q9BY42 306 aaPredicted RBP9.67□□□□□ -0.86
ATXN3-219ENST00000553488 GLIS2Q9BZE0 524 aaPredicted RBP9.67□□□□□ -0.86
ATXN3-219ENST00000553488 MCOLN1Q9GZU1 580 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 ZBTB3Q9H5J0 574 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 MIS18AQ9NYP9 233 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 LIMD1Q9UGP4 676 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 PGAP2Q9UHJ9 254 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 PSME4Q14997 1843 aa9.67□□□□□ -0.86
ATXN3-219ENST00000553488 SPDYE5A6NIY4 337 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 C6orf229H3BNL8 230 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 CA12O43570 354 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 CELF2O95319 508 aaKnown RBP9.66□□□□□ -0.86
ATXN3-219ENST00000553488 PPP2R1AP30153 589 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 GMPSP49915 693 aaPredicted RBP9.66□□□□□ -0.86
ATXN3-219ENST00000553488 EIF4A1P60842 406 aaKnown RBP9.66□□□□□ -0.86
ATXN3-219ENST00000553488 PRPF38BQ5VTL8 546 aaKnown RBP9.66□□□□□ -0.86
ATXN3-219ENST00000553488 DESI1Q6ICB0 168 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 KIF6Q6ZMV9 814 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 NGEFQ8N5V2 710 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 RBM17Q96I25 401 aaKnown RBP9.66□□□□□ -0.86
ATXN3-219ENST00000553488 FAM117AQ9C073 453 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 VPS33BQ9H267 617 aa9.66□□□□□ -0.86
ATXN3-219ENST00000553488 NUDCQ9Y266 331 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms