RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 GMLQ99445 158 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 LPIN3Q9BQK8 851 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 TANGO6Q9C0B7 1094 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 GGT7Q9UJ14 662 aa7.79□□□□□ -1.16
SCFD1-209ENST00000553280 A0A0A0MRY4 1105 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 GADD45BO75293 160 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-209ENST00000553280 USP17L7P0C7H9 530 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 CES1P23141 567 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 GPLD1P80108 840 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 PCSK7Q16549 785 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 ZNF394Q53GI3 561 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 MEI1Q5TIA1 1274 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 KIAA0319Q5VV43 1072 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 USP48Q86UV5 1035 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 DMRTC2Q8IXT2 367 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-209ENST00000553280 PPP4R2Q9NY27 417 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 PRKAG2Q9UGJ0 569 aa7.78□□□□□ -1.16
SCFD1-209ENST00000553280 J3QW42 95 aa7.77□□□□□ -1.17
SCFD1-209ENST00000553280 K7ELQ4 463 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-209ENST00000553280 MMP20O60882 483 aa7.77□□□□□ -1.17
SCFD1-209ENST00000553280 TNNI2P48788 182 aa7.77□□□□□ -1.17
SCFD1-209ENST00000553280 GRM2Q14416 872 aa7.77□□□□□ -1.17
SCFD1-209ENST00000553280 NSUN5Q96P11 429 aaKnown RBP7.77□□□□□ -1.17
SCFD1-209ENST00000553280 TLR7Q9NYK1 1049 aaKnown RBP7.77□□□□□ -1.17
SCFD1-209ENST00000553280 EIF2AK2P19525 551 aaKnown RBP7.76□□□□□ -1.17
SCFD1-209ENST00000553280 SMG9Q9H0W8 520 aaKnown RBP7.76□□□□□ -1.17
SCFD1-209ENST00000553280 INPP5FQ9Y2H2 1132 aa7.76□□□□□ -1.17
SCFD1-209ENST00000553280 PCDHGB7Q9Y5F8 929 aa7.76□□□□□ -1.17
SCFD1-209ENST00000553280 PSAPP07602 524 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 EDN3P14138 238 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 ATP2B1P20020 1258 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 GSTT1P30711 240 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 NRLP54845 237 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 RAC1P63000 192 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 GRIK5Q16478 980 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 SHISA2Q6UWI4 295 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 ERMP1Q7Z2K6 904 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 ARMC5Q96C12 935 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 NACC1Q96RE7 527 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 FRRS1LQ9P0K9 344 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 TRAK1Q9UPV9 953 aa7.75□□□□□ -1.17
SCFD1-209ENST00000553280 A0A1W2PP55 124 aa7.74□□□□□ -1.17
SCFD1-209ENST00000553280 CYP2E1P05181 493 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-209ENST00000553280 PEAR1Q5VY43 1037 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-209ENST00000553280 MSL1Q68DK7 614 aa7.74□□□□□ -1.17
SCFD1-209ENST00000553280 GLIS3Q8NEA6 775 aa7.74□□□□□ -1.17
SCFD1-209ENST00000553280 OR13H1Q8NG92 308 aa7.74□□□□□ -1.17
SCFD1-209ENST00000553280 NOC4LQ9BVI4 516 aaKnown RBP7.74□□□□□ -1.17
SCFD1-209ENST00000553280 SALL4Q9UJQ4 1053 aa7.74□□□□□ -1.17
SCFD1-209ENST00000553280 LOC102724428A0A0B4J2F2 783 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 SELPP16109 830 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 SIK1P57059 783 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 ARID5AQ03989 594 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 VPS37DQ86XT2 251 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 FMR1NBQ8N0W7 255 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-209ENST00000553280 C3orf58Q8NDZ4 430 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 EHD4Q9H223 541 aa7.73□□□□□ -1.17
SCFD1-209ENST00000553280 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-209ENST00000553280 GHRHP01286 108 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 ELNP15502 786 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 PRPF40BQ6NWY9 871 aaKnown RBP7.72□□□□□ -1.17
SCFD1-209ENST00000553280 WFDC8Q8IUA0 241 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 FAM177A1Q8N128 213 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-209ENST00000553280 ANKRD24Q8TF21 1146 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 PLD4Q96BZ4 506 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 RSRP1Q9BUV0 290 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 LATS2Q9NRM7 1088 aa7.72□□□□□ -1.17
SCFD1-209ENST00000553280 C9orf172C9J069 976 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 XRCC5P13010 732 aaKnown RBP7.71□□□□□ -1.18
SCFD1-209ENST00000553280 DNAJA1P31689 397 aaKnown RBP7.71□□□□□ -1.18
SCFD1-209ENST00000553280 GJA8P48165 433 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 GDF6Q6KF10 455 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-209ENST00000553280 DPH6Q7L8W6 267 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 DHX38Q92620 1227 aaKnown RBP7.71□□□□□ -1.18
SCFD1-209ENST00000553280 SEMA6BQ9H3T3 888 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 COPRSQ9NQ92 184 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 TPSG1Q9NRR2 321 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 KANSL3Q9P2N6 904 aa7.71□□□□□ -1.18
SCFD1-209ENST00000553280 GTF2F1P35269 517 aaKnown RBP eCLIP7.7□□□□□ -1.18
SCFD1-209ENST00000553280 SOX18P35713 384 aa7.7□□□□□ -1.18
SCFD1-209ENST00000553280 RBL2Q08999 1139 aa7.7□□□□□ -1.18
SCFD1-209ENST00000553280 ILDR2Q71H61 639 aa7.7□□□□□ -1.18
SCFD1-209ENST00000553280 TTC9Q92623 222 aa7.7□□□□□ -1.18
SCFD1-209ENST00000553280 DNAJC2Q99543 621 aaKnown RBP7.7□□□□□ -1.18
SCFD1-209ENST00000553280 USP21Q9UK80 565 aa7.7□□□□□ -1.18
SCFD1-209ENST00000553280 PPM1HQ9ULR3 514 aa7.7□□□□□ -1.18
SCFD1-209ENST00000553280 TTF2Q9UNY4 1162 aaKnown RBP7.7□□□□□ -1.18
SCFD1-209ENST00000553280 TMEM238LA0A1B0GVL6 79 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 KIF4AO95239 1232 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 HOXD8P13378 290 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-209ENST00000553280 PWP1Q13610 501 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 ADGRE1Q14246 886 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 MBTPS1Q14703 1052 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 COL13A1Q5TAT6 717 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-209ENST00000553280 RBSNQ9H1K0 784 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 KBTBD4Q9NVX7 518 aa7.69□□□□□ -1.18
SCFD1-209ENST00000553280 ATF4P18848 351 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-209ENST00000553280 CANXP27824 592 aaKnown RBP7.68□□□□□ -1.18
SCFD1-209ENST00000553280 FCGRTP55899 365 aa7.68□□□□□ -1.18
SCFD1-209ENST00000553280 PAK2Q13177 524 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms