RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 DPF3Q92784 378 aa15.45■□□□□ 0.06
PTCH1-222ENST00000551425 OPTNQ96CV9 577 aa15.45■□□□□ 0.06
PTCH1-222ENST00000551425 GREM2Q9H772 168 aa15.45■□□□□ 0.06
PTCH1-222ENST00000551425 PHAXQ9H814 394 aaKnown RBP15.45■□□□□ 0.06
PTCH1-222ENST00000551425 SPDYE2BA6NHP3 402 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 MYO1BO43795 1136 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 MYCP01106 439 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-222ENST00000551425 SPDYE6P0CI01 402 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 KLRK1P26718 216 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 CERS5Q8N5B7 392 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 SHISA4Q96DD7 197 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 METTL22Q9BUU2 404 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-222ENST00000551425 TRIM35Q9UPQ4 493 aa15.44■□□□□ 0.06
PTCH1-222ENST00000551425 CUL9Q8IWT3 2517 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 CLRN2A0PK11 232 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 GNRH1P01148 92 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 GTF2A2P52657 109 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 ANKRD2Q9GZV1 360 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 ELP3Q9H9T3 547 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 PCDHAC2Q9Y5I4 1007 aa15.43■□□□□ 0.06
PTCH1-222ENST00000551425 COL6A3P12111 3177 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 A0A1W2PPC1 479 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 MNX1P50219 401 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-222ENST00000551425 PRMT2P55345 433 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 RASA3Q14644 834 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 CFAP100Q494V2 611 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 UBE2Q1Q7Z7E8 422 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 PRMT6Q96LA8 375 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-222ENST00000551425 VEZTQ9HBM0 779 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 CD209Q9NNX6 404 aa15.42■□□□□ 0.06
PTCH1-222ENST00000551425 CCL15-CCL14A0A0B4J2E2 113 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 TLR2O60603 784 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 IGHMBP2P38935 993 aaKnown RBP15.41■□□□□ 0.06
PTCH1-222ENST00000551425 FKBP1AP62942 108 aaKnown RBP15.41■□□□□ 0.06
PTCH1-222ENST00000551425 LACTBP83111 547 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-222ENST00000551425 KIF22Q14807 665 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 NEUROD2Q15784 382 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 CCL15Q16663 113 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 FAM43AQ8N2R8 423 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 NKX2-3Q8TAU0 364 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 HTATIP2Q9BUP3 242 aa15.41■□□□□ 0.06
PTCH1-222ENST00000551425 WDHD1O75717 1129 aaPredicted RBP15.4■□□□□ 0.06
PTCH1-222ENST00000551425 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.4■□□□□ 0.06
PTCH1-222ENST00000551425 ARHGAP39Q9C0H5 1083 aa15.4■□□□□ 0.06
PTCH1-222ENST00000551425 ZCCHC17Q9NP64 241 aaKnown RBP15.4■□□□□ 0.06
PTCH1-222ENST00000551425 AOX1Q06278 1338 aa15.4■□□□□ 0.06
PTCH1-222ENST00000551425 IRS2Q9Y4H2 1338 aa15.4■□□□□ 0.06
PTCH1-222ENST00000551425 ECM29Q5VYK3 1845 aa15.39■□□□□ 0.05
PTCH1-222ENST00000551425 DDX58O95786 925 aaKnown RBP15.39■□□□□ 0.05
PTCH1-222ENST00000551425 TNFAIP1Q13829 316 aa15.39■□□□□ 0.05
PTCH1-222ENST00000551425 MTFR1Q15390 333 aa15.39■□□□□ 0.05
PTCH1-222ENST00000551425 C15orf52Q6ZUT6 534 aaKnown RBP15.39■□□□□ 0.05
PTCH1-222ENST00000551425 CNKSR2Q8WXI2 1034 aa15.39■□□□□ 0.05
PTCH1-222ENST00000551425 MBIPQ9NS73 344 aa15.39■□□□□ 0.05
PTCH1-222ENST00000551425 NR2E3Q9Y5X4 410 aa15.39■□□□□ 0.05
PTCH1-222ENST00000551425 F8W031 263 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-222ENST00000551425 ZBTB7BO15156 539 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-222ENST00000551425 IGKV5-2P06315 115 aa15.38■□□□□ 0.05
PTCH1-222ENST00000551425 GJA8P48165 433 aa15.38■□□□□ 0.05
PTCH1-222ENST00000551425 VGLL4Q14135 290 aa15.38■□□□□ 0.05
PTCH1-222ENST00000551425 OTOFQ9HC10 1997 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 GJB1P08034 283 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 IL1R1P14778 569 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 KCNJ4P48050 445 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 MAP3K9P80192 1104 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.37■□□□□ 0.05
PTCH1-222ENST00000551425 TEPSINQ96N21 525 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 MPHOSPH8Q99549 860 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 MAP3K2Q9Y2U5 619 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 SPEF2Q9C093 1822 aa15.37■□□□□ 0.05
PTCH1-222ENST00000551425 SOX1O00570 391 aaPredicted RBP15.36■□□□□ 0.05
PTCH1-222ENST00000551425 ZNF853P0CG23 659 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 CETPP11597 493 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 ITGA6P23229 1130 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 CHRNDQ07001 517 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 SPDYE2Q495Y8 402 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 CCDC146Q8IYE0 955 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 CSADQ9Y600 493 aa15.36■□□□□ 0.05
PTCH1-222ENST00000551425 SPDYE5A6NIY4 337 aa15.35■□□□□ 0.05
PTCH1-222ENST00000551425 H7C1W4 665 aa15.35■□□□□ 0.05
PTCH1-222ENST00000551425 GRK4P32298 578 aa15.35■□□□□ 0.05
PTCH1-222ENST00000551425 RBM5P52756 815 aaKnown RBP eCLIP15.35■□□□□ 0.05
PTCH1-222ENST00000551425 HELBQ8NG08 1087 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-222ENST00000551425 RUNDC1Q96C34 613 aa15.35■□□□□ 0.05
PTCH1-222ENST00000551425 PLA2G12BQ9BX93 195 aa15.35■□□□□ 0.05
PTCH1-222ENST00000551425 ZNF70Q9UC06 446 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-222ENST00000551425 SRRDQ9UH36 339 aa15.35■□□□□ 0.05
PTCH1-222ENST00000551425 BTBD19C9JJ37 291 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 CCL5P13501 91 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 C17orf99Q6UX52 265 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 KSR2Q6VAB6 950 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 ZNF804AQ7Z570 1209 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 CDAN1Q8IWY9 1227 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 LRCH3Q96II8 777 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 MYH3P11055 1940 aa15.34■□□□□ 0.05
PTCH1-222ENST00000551425 ZSWIM8A7E2V4 1837 aa15.33■□□□□ 0.05
PTCH1-222ENST00000551425 PI4KAP2A4QPH2 592 aa15.33■□□□□ 0.04
PTCH1-222ENST00000551425 NEURL1BA8MQ27 555 aa15.33■□□□□ 0.04
PTCH1-222ENST00000551425 SNAP23O00161 211 aa15.33■□□□□ 0.04
PTCH1-222ENST00000551425 ELL2O00472 640 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms