RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ACTN2P35609 894 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 TAX1BP1Q86VP1 789 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 FAM135BQ49AJ0 1406 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 GOLGA6L7A0A1B0GV03 622 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 AP5Z1O43299 807 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 IL17REQ8NFR9 667 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.24■□□□□ 0.19
LIMS1-215ENST00000544547 ZCCHC11Q5TAX3 1644 aaKnown RBP16.24■□□□□ 0.19
LIMS1-215ENST00000544547 YEATS4O95619 227 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 IFIT1P09914 478 aaKnown RBP16.24■□□□□ 0.19
LIMS1-215ENST00000544547 MAP2K2P36507 400 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 LONRF2Q1L5Z9 754 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 SPECC1Q5M775 1068 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 ZSWIM6Q9HCJ5 1215 aa16.24■□□□□ 0.19
LIMS1-215ENST00000544547 KCNQ3O43525 872 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 ERLIN2O94905 339 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 HOXC9P31274 260 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 ADAM21Q9UKJ8 722 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 SPHKAPQ2M3C7 1700 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 LAMC1P11047 1609 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 GRM8O00222 908 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 RXRAP19793 462 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 FAM76AQ8TAV0 307 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 KIAA1468Q9P260 1216 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 PIP4K2BP78356 416 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 ST5P78524 1137 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 DPCR1Q3MIW9 517 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 BANK1Q8NDB2 785 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 FAN1Q9Y2M0 1017 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 GNL3LQ9NVN8 582 aaKnown RBP16.23■□□□□ 0.19
LIMS1-215ENST00000544547 PPP2R2CQ9Y2T4 447 aa16.23■□□□□ 0.19
LIMS1-215ENST00000544547 MICALCLQ6ZW33 695 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 ALG1Q9BT22 464 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 PARD6BQ9BYG5 372 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 METP08581 1390 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 KIAA0232Q92628 1395 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 INPP5BP32019 993 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 EPS15P42566 896 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 NACAP1Q9BZK3 213 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 IDH1O75874 414 aaKnown RBP16.22■□□□□ 0.19
LIMS1-215ENST00000544547 GBP2P32456 591 aaPredicted RBP16.22■□□□□ 0.19
LIMS1-215ENST00000544547 ENOX2Q16206 610 aaKnown RBP16.22■□□□□ 0.19
LIMS1-215ENST00000544547 COPS6Q7L5N1 327 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 TRMT44Q8IYL2 757 aaKnown RBP16.22■□□□□ 0.19
LIMS1-215ENST00000544547 PTCH1Q13635 1447 aa16.22■□□□□ 0.19
LIMS1-215ENST00000544547 PSDA5PKW4 1024 aaPredicted RBP16.21■□□□□ 0.19
LIMS1-215ENST00000544547 KSR2Q6VAB6 950 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 DHX32Q7L7V1 743 aaKnown RBP16.21■□□□□ 0.19
LIMS1-215ENST00000544547 MAATS1Q7Z4T9 603 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 EFCC1Q9HA90 598 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 FEZ2Q9UHY8 353 aaPredicted RBP16.21■□□□□ 0.19
LIMS1-215ENST00000544547 TTC21AQ8NDW8 1320 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 CYP2C19P33261 490 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 HLTFQ14527 1009 aaKnown RBP eCLIP16.21■□□□□ 0.191e-8■□□□□ 9.5
LIMS1-215ENST00000544547 SPA17Q15506 151 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 MCMDC2Q4G0Z9 681 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 TM6SF1Q9BZW5 370 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 EFCAB6Q5THR3 1501 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 ZNF213O14771 459 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 PLA2G4DQ86XP0 818 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 XAGE3Q8WTP9 111 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 SCLT1Q96NL6 688 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 TANGO6Q9C0B7 1094 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 KIF24Q5T7B8 1368 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 MAP3K5Q99683 1374 aa16.21■□□□□ 0.19
LIMS1-215ENST00000544547 NUTM2BA6NNL0 878 aaPredicted RBP16.21■□□□□ 0.18
LIMS1-215ENST00000544547 NUTM2EB1AL46 878 aaPredicted RBP16.21■□□□□ 0.18
LIMS1-215ENST00000544547 TXLNAP40222 546 aa16.21■□□□□ 0.18
LIMS1-215ENST00000544547 PAFAH1B1P43034 410 aa16.21■□□□□ 0.18
LIMS1-215ENST00000544547 ICE2Q659A1 982 aa16.21■□□□□ 0.18
LIMS1-215ENST00000544547 NUTM2AQ8IVF1 878 aaPredicted RBP16.21■□□□□ 0.18
LIMS1-215ENST00000544547 LOC102724159A0A0B4J2E5 919 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 NDUFAB1O14561 156 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 IARSP41252 1262 aaKnown RBP16.2■□□□□ 0.18
LIMS1-215ENST00000544547 ATP2B2Q01814 1243 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 PWP2Q15269 919 aaKnown RBP16.2■□□□□ 0.18
LIMS1-215ENST00000544547 BICC1Q9H694 974 aaKnown RBP16.2■□□□□ 0.18
LIMS1-215ENST00000544547 TNRQ92752 1358 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 AKR1B15C9JRZ8 316 aaPredicted RBP16.2■□□□□ 0.18
LIMS1-215ENST00000544547 KCNH5Q8NCM2 988 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 NFE2L3Q9Y4A8 694 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 NLRP12P59046 1061 aa16.2■□□□□ 0.18
LIMS1-215ENST00000544547 PRR36Q9H6K5 1346 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 AMOTQ4VCS5 1084 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 MKRN1Q9UHC7 482 aaKnown RBP16.19■□□□□ 0.18
LIMS1-215ENST00000544547 SSH2Q76I76 1423 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 A0A0D9SFI3 127 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 CDC25BP30305 580 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 CCT6AP40227 531 aaKnown RBP16.19■□□□□ 0.18
LIMS1-215ENST00000544547 NDUFA8P51970 172 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 WWC2Q6AWC2 1192 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 SSH3Q8TE77 659 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 SLC26A6Q9BXS9 759 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 RNF17Q9BXT8 1623 aaKnown RBP16.19■□□□□ 0.18
LIMS1-215ENST00000544547 IGSF22Q8N9C0 903 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 SHROOM2Q13796 1616 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 HSF2BPO75031 334 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 STIM1Q13586 685 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 PGBD1Q96JS3 809 aa16.19■□□□□ 0.18
LIMS1-215ENST00000544547 IQSEC2Q5JU85 1478 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms