RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FCHSD1Q86WN1 690 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 SLC10A4Q96EP9 437 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 GLT8D2Q9H1C3 349 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 KIF28PB7ZC32 967 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 GJB2P29033 226 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 PPP2R5BQ15173 497 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 KRT222Q8N1A0 295 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 TTLL6Q8N841 843 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 JAKMIP2Q96AA8 810 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 ZMYND15Q9H091 742 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 HELLSQ9NRZ9 838 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 TCP11L1Q9NUJ3 509 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 KIF1BO60333 1816 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 SYCE3A1L190 88 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 ATP5J2-PTCD1G3V325 749 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 ZSCAN23Q3MJ62 389 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 DZIP3Q86Y13 1208 aaKnown RBP8.89□□□□□ -0.99
VPS13D-211ENST00000543710 SLC17A8Q8NDX2 589 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 IMPACTQ9P2X3 320 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 PREX2Q70Z35 1606 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 PATL2C9JE40 543 aaKnown RBP8.89□□□□□ -0.99
VPS13D-211ENST00000543710 NR1I2O75469 434 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 TNNT1P13805 278 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 DPF3Q92784 378 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 EXOC4Q96A65 974 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 NAPBQ9H115 298 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 CWC25Q9NXE8 425 aaPredicted RBP8.89□□□□□ -0.99
VPS13D-211ENST00000543710 ATP10BO94823 1461 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 ANKRD62A6NC57 917 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 FOSBP53539 338 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC102BQ68D86 513 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 TSNARE1Q96NA8 513 aa8.89□□□□□ -0.99
VPS13D-211ENST00000543710 CROCC2H7BZ55 1655 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 KCNQ2O43526 872 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 MPNDQ8N594 471 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 COA7Q96BR5 231 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 NEK1Q96PY6 1258 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 NUP88Q99567 741 aaPredicted RBP8.88□□□□□ -0.99
VPS13D-211ENST00000543710 ZBED2Q9BTP6 218 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 PNMA3Q9UL41 463 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 VWA3BQ502W6 1294 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 MCTP2Q6DN12 878 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 PRPF40BQ6NWY9 871 aaKnown RBP8.88□□□□□ -0.99
VPS13D-211ENST00000543710 NUP133Q8WUM0 1156 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 GOLGA1Q92805 767 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 HTATIP2Q9BUP3 242 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 SRGAP2BP0DMP2 458 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 NT5C2P49902 561 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 TBC1D2Q9BYX2 928 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 SLC12A5Q9H2X9 1139 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 TSKSQ9UJT2 592 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 GGA1Q9UJY5 639 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 KDM5CP41229 1560 aa8.88□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC194A0A1B0GVG4 234 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 IFFO1Q0D2I5 559 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 RAB3GAP1Q15042 981 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 HACE1Q8IYU2 909 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 MRPL50Q8N5N7 158 aaKnown RBP8.87□□□□□ -0.99
VPS13D-211ENST00000543710 C1orf115Q9H7X2 142 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 MAP3K5Q99683 1374 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 CALML3P27482 149 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 TMED8Q6PL24 325 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-211ENST00000543710 ANKRD44Q8N8A2 993 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 CRNKL1Q9BZJ0 848 aaKnown RBP8.87□□□□□ -0.99
VPS13D-211ENST00000543710 FLT4P35916 1363 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 BRPF1P55201 1214 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-211ENST00000543710 MSANTD4Q8NCY6 345 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 EXOC1Q9NV70 894 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 ATP8B2P98198 1209 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 KIF4BQ2VIQ3 1234 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 TBC1D9Q6ZT07 1266 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 SPATS2Q86XZ4 545 aaKnown RBP8.87□□□□□ -0.99
VPS13D-211ENST00000543710 ANKS4BQ8N8V4 417 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 DYDC1Q8WWB3 177 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 NAP1L3Q99457 506 aaPredicted RBP8.87□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC77Q9BR77 488 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 FAM50BQ9Y247 325 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 PZPP20742 1482 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 CDC37L1Q7L3B6 337 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 FSIP1Q8NA03 581 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 RETREG2Q8NC44 543 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 SWAP70Q9UH65 585 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 USH1CQ9Y6N9 552 aa8.87□□□□□ -0.99
VPS13D-211ENST00000543710 STK3Q13188 491 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 DCAF5Q96JK2 942 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 PNMA2Q9UL42 364 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 GTPBP6O43824 516 aaPredicted RBP8.86□□□□□ -0.99
VPS13D-211ENST00000543710 CCDC175P0C221 793 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 RAET1EQ8TD07 263 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 SSH1Q8WYL5 1049 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 TIGD1Q96MW7 591 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 MYD88Q99836 296 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 ARAP3Q8WWN8 1544 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 ADCY5O95622 1261 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 GCP02774 474 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 METAP2P50579 478 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS13D-211ENST00000543710 OGFRQ9NZT2 677 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 PRC1O43663 620 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 GPTP24298 496 aa8.86□□□□□ -0.99
VPS13D-211ENST00000543710 ARFGAP2Q8N6H7 521 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms