RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 STARD3NLO95772 234 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 FBXO45P0C2W1 286 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 ZNF853P0CG23 659 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 PTK2Q05397 1052 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 NR1H3Q13133 447 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 SLC15A2Q16348 729 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 ZNF511Q8NB15 262 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 ARHGAP9Q9BRR9 750 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 TFCP2L1Q9NZI6 479 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 KCPQ6ZWJ8 1503 aa6.53□□□□□ -1.36
CLIP1-217ENST00000543205 SIPA1L3O60292 1781 aaPredicted RBP6.53□□□□□ -1.36
CLIP1-217ENST00000543205 LY75O60449 1722 aa6.53□□□□□ -1.36
CLIP1-217ENST00000543205 CRKLP46109 303 aaKnown RBP6.53□□□□□ -1.36
CLIP1-217ENST00000543205 RPIAP49247 311 aa6.53□□□□□ -1.36
CLIP1-217ENST00000543205 ZNF827Q17R98 1081 aa6.53□□□□□ -1.36
CLIP1-217ENST00000543205 MYH16Q9H6N6 1097 aa6.53□□□□□ -1.36
CLIP1-217ENST00000543205 PAPPAQ13219 1627 aa6.53□□□□□ -1.36
CLIP1-217ENST00000543205 MAGEB6P1A0A0J9YX57 407 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 GIGYF1O75420 1035 aaPredicted RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 CYP19A1P11511 503 aaPredicted RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 PKDCCQ504Y2 493 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 NAALADL2Q58DX5 795 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 RC3H1Q5TC82 1133 aaKnown RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 TSR2Q969E8 191 aaKnown RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 GPSM3Q9Y4H4 160 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 USP16Q9Y5T5 823 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 RREB1Q92766 1687 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 ZNF521Q96K83 1311 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 CNTNAP4Q9C0A0 1308 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 PRAMEF22A3QJZ6 481 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 PALM3A6NDB9 673 aaPredicted RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 LMOD1P29536 600 aaPredicted RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 SH3BP2P78314 561 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 LIAT1Q6ZQX7 453 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 SH3BP5LQ7L8J4 393 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 ZBTB33Q86T24 672 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 FLAD1Q8NFF5 587 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 FOXJ1Q92949 421 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 CCDC87Q9NVE4 849 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 RTCBQ9Y3I0 505 aaKnown RBP6.52□□□□□ -1.37
CLIP1-217ENST00000543205 NUP188Q5SRE5 1749 aa6.52□□□□□ -1.37
CLIP1-217ENST00000543205 LOC102724159A0A0B4J2E5 919 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 RPS6KA4O75676 772 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 EIF2S2P20042 333 aaKnown RBP6.51□□□□□ -1.37
CLIP1-217ENST00000543205 SLC19A1P41440 591 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 PWP2Q15269 919 aaKnown RBP6.51□□□□□ -1.37
CLIP1-217ENST00000543205 TRAPPC3LQ5T215 181 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 DUSP27Q5VZP5 1158 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 PHLDB3Q6NSJ2 640 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 INTS5Q6P9B9 1019 aaKnown RBP6.51□□□□□ -1.37
CLIP1-217ENST00000543205 BPHLQ86WA6 291 aaPredicted RBP6.51□□□□□ -1.37
CLIP1-217ENST00000543205 UBR2Q8IWV8 1755 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 FANCIQ9NVI1 1328 aa6.51□□□□□ -1.37
CLIP1-217ENST00000543205 ELL2O00472 640 aaPredicted RBP6.5□□□□□ -1.37
CLIP1-217ENST00000543205 WIPF1O43516 503 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 CLSTN1O94985 981 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 CD2BP2O95400 341 aaKnown RBP6.5□□□□□ -1.37
CLIP1-217ENST00000543205 A1BGP04217 495 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 HOXB7P09629 217 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 SSFA2P28290 1259 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 TAGLNQ01995 201 aaKnown RBP6.5□□□□□ -1.37
CLIP1-217ENST00000543205 KRT24Q2M2I5 525 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 MICAL1Q8TDZ2 1067 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 C5P01031 1676 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 ZNF831Q5JPB2 1677 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 KDM3BQ7LBC6 1761 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 C4BP0C0L5 1744 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 WNT7BP56706 349 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 SKOR1P84550 965 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 SLFN5Q08AF3 891 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 C8orf58Q8NAV2 365 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 ADAM32Q8TC27 787 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 EMID1Q96A84 441 aaPredicted RBP6.5□□□□□ -1.37
CLIP1-217ENST00000543205 UCN2Q96RP3 112 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 OCSTAMPQ9BR26 566 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 ZBTB1Q9Y2K1 713 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 RIPOR2Q9Y4F9 1068 aa6.5□□□□□ -1.37
CLIP1-217ENST00000543205 SOS1Q07889 1333 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 PNPLA7Q6ZV29 1317 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 TJP1Q07157 1748 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 A0A087WZG4 1122 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 ATG7O95352 703 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 RECKO95980 971 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 RFC4P35249 363 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 IL6STP40189 918 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 PIP4K2AP48426 406 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 EXOSC9Q06265 439 aaKnown RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 SEMA3FQ13275 785 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 TWISTNBQ3B726 338 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 SMIM5Q71RC9 77 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 DPH6Q7L8W6 267 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 SH3RF1Q7Z6J0 888 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 COL23A1Q86Y22 540 aaPredicted RBP6.49□□□□□ -1.37
CLIP1-217ENST00000543205 PCDHB9Q9Y5E1 797 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 ZBED9Q6R2W3 1325 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 TAF1LQ8IZX4 1826 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 RAB11FIP3O75154 756 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 WFS1O76024 890 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 MYL6BP14649 208 aa6.49□□□□□ -1.37
CLIP1-217ENST00000543205 SOX11P35716 441 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms