RNA–Protein interactions for RNA: ENST00000543162.1

DDB1-221, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-221ENST00000543162 SNED1Q8TER0 1413 aa12.92□□□□□ -0.34
DDB1-221ENST00000543162 COA1Q9GZY4 146 aa12.92□□□□□ -0.34
DDB1-221ENST00000543162 CD209Q9NNX6 404 aa12.92□□□□□ -0.34
DDB1-221ENST00000543162 RFX7Q2KHR2 1363 aa12.92□□□□□ -0.34
DDB1-221ENST00000543162 MYH13Q9UKX3 1938 aa12.92□□□□□ -0.34
DDB1-221ENST00000543162 PDS5AQ29RF7 1337 aaKnown RBP12.91□□□□□ -0.34
DDB1-221ENST00000543162 EIF5BO60841 1220 aaKnown RBP12.91□□□□□ -0.34
DDB1-221ENST00000543162 IL1R1P14778 569 aa12.91□□□□□ -0.34
DDB1-221ENST00000543162 CHAF1AQ13111 956 aaPredicted RBP12.91□□□□□ -0.34
DDB1-221ENST00000543162 RUFY2Q8WXA3 655 aa12.91□□□□□ -0.34
DDB1-221ENST00000543162 PSMD1Q99460 953 aa12.91□□□□□ -0.34
DDB1-221ENST00000543162 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.91□□□□□ -0.341e-6■■■■□ 23
DDB1-221ENST00000543162 PIH1D3Q9NQM4 214 aaKnown RBP12.91□□□□□ -0.34
DDB1-221ENST00000543162 COL1A1P02452 1464 aaPredicted RBP12.91□□□□□ -0.34
DDB1-221ENST00000543162 IDH1O75874 414 aaKnown RBP12.9□□□□□ -0.34
DDB1-221ENST00000543162 DOK7Q18PE1 504 aa12.9□□□□□ -0.34
DDB1-221ENST00000543162 ZSCAN25Q6NSZ9 544 aa12.9□□□□□ -0.34
DDB1-221ENST00000543162 ESYT1Q9BSJ8 1104 aa12.9□□□□□ -0.34
DDB1-221ENST00000543162 LRP2BPQ9P2M1 347 aa12.9□□□□□ -0.34
DDB1-221ENST00000543162 RNF113AO15541 343 aaKnown RBP12.89□□□□□ -0.35
DDB1-221ENST00000543162 PPIP5K2O43314 1243 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 ZFYP08048 801 aaPredicted RBP12.89□□□□□ -0.35
DDB1-221ENST00000543162 KIAA2012Q0VF49 1180 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 MAP3K12Q12852 859 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 NMIQ13287 307 aaPredicted RBP12.89□□□□□ -0.35
DDB1-221ENST00000543162 AOC3Q16853 763 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 CWC27Q6UX04 472 aaKnown RBP12.89□□□□□ -0.35
DDB1-221ENST00000543162 WDR66Q8TBY9 1149 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 SYT17Q9BSW7 474 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 VPS33BQ9H267 617 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 ABCF2Q9UG63 623 aa12.89□□□□□ -0.35
DDB1-221ENST00000543162 SEC24BO95487 1268 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 MFAP1P55081 439 aaKnown RBP12.88□□□□□ -0.35
DDB1-221ENST00000543162 SLC9C2Q5TAH2 1124 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 PODNQ7Z5L7 613 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 ZGPATQ8N5A5 531 aaKnown RBP12.88□□□□□ -0.35
DDB1-221ENST00000543162 FAM227BQ96M60 508 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 TAOK3Q9H2K8 898 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 DBNDD1Q9H9R9 158 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 UPF2Q9HAU5 1272 aaKnown RBP12.88□□□□□ -0.35
DDB1-221ENST00000543162 ZNF277Q9NRM2 450 aaPredicted RBP12.88□□□□□ -0.35
DDB1-221ENST00000543162 JAG2Q9Y219 1238 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 MYH7P12883 1935 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 DOCK2Q92608 1830 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 ARFGEF1Q9Y6D6 1849 aa12.88□□□□□ -0.35
DDB1-221ENST00000543162 FER1L6Q2WGJ9 1857 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 MYO5AQ9Y4I1 1855 aaKnown RBP12.87□□□□□ -0.35
DDB1-221ENST00000543162 A0A0D9SFI3 127 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 SGSM2O43147 1006 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 ECE2O60344 883 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 REC8O95072 547 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 PDE6AP16499 860 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 SPTY2D1Q68D10 685 aaPredicted RBP12.87□□□□□ -0.35
DDB1-221ENST00000543162 ERICH6Q7L0X2 663 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 LARGE2Q8N3Y3 721 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 TBC1D22AQ8WUA7 517 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 RAI14Q9P0K7 980 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 FAM205AQ6ZU69 1335 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 RAD50Q92878 1312 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 SALL1Q9NSC2 1324 aa12.87□□□□□ -0.35
DDB1-221ENST00000543162 NFKBIEO00221 500 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 CHGBP05060 677 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 ADD2P35612 726 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 IARSP41252 1262 aaKnown RBP12.86□□□□□ -0.35
DDB1-221ENST00000543162 GTF2IP78347 998 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 UBE3CQ15386 1083 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 ZMYM1Q5SVZ6 1142 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 MAGEB6Q8N7X4 407 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 APPBP2Q92624 585 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 FBXW7Q969H0 707 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 HELLSQ9NRZ9 838 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 CHD4Q14839 1912 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 ZNF532Q9HCE3 1301 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 LTBP3Q9NS15 1303 aa12.86□□□□□ -0.35
DDB1-221ENST00000543162 IGSF3O75054 1194 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 LDHBP07195 334 aaKnown RBP12.85□□□□□ -0.35
DDB1-221ENST00000543162 SLFNL1Q499Z3 407 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 MCMDC2Q4G0Z9 681 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 MFSD14BQ5SR56 506 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 TTLL5Q6EMB2 1281 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 KIAA1211Q6ZU35 1233 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 NIM1KQ8IY84 436 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 IL25Q9H293 177 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 ANO2Q9NQ90 1003 aa12.85□□□□□ -0.35
DDB1-221ENST00000543162 TCRBV5S4A2TA0A5A2 114 aa12.84□□□□□ -0.35
DDB1-221ENST00000543162 CYP7A1P22680 504 aa12.84□□□□□ -0.35
DDB1-221ENST00000543162 PRDX5P30044 214 aa12.84□□□□□ -0.35
DDB1-221ENST00000543162 NAA16Q6N069 864 aaPredicted RBP12.84□□□□□ -0.35
DDB1-221ENST00000543162 TMED8Q6PL24 325 aaPredicted RBP12.84□□□□□ -0.35
DDB1-221ENST00000543162 DZIP1Q86YF9 867 aaKnown RBP12.84□□□□□ -0.35
DDB1-221ENST00000543162 SEC62Q99442 399 aaKnown RBP12.84□□□□□ -0.35
DDB1-221ENST00000543162 TSHZ2Q9NRE2 1034 aa12.84□□□□□ -0.35
DDB1-221ENST00000543162 MAST3O60307 1309 aa12.84□□□□□ -0.35
DDB1-221ENST00000543162 USP17L3A6NCW0 530 aa12.83□□□□□ -0.36
DDB1-221ENST00000543162 USP17L4A6NCW7 530 aa12.83□□□□□ -0.36
DDB1-221ENST00000543162 RASSF7Q02833 373 aa12.83□□□□□ -0.36
DDB1-221ENST00000543162 MECOMQ03112 1051 aa12.83□□□□□ -0.36
DDB1-221ENST00000543162 STRIP1Q5VSL9 837 aa12.83□□□□□ -0.36
DDB1-221ENST00000543162 ARHGAP27Q6ZUM4 889 aa12.83□□□□□ -0.36
DDB1-221ENST00000543162 USP17L1Q7RTZ2 530 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms