RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CNTNAP4Q9C0A0 1308 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 WASHC4Q2M389 1173 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 FNBP4Q8N3X1 1017 aaPredicted RBP16.3■□□□□ 0.2
RTN3-210ENST00000540798 LINC00116Q8NCU8 138 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 TCRBV5S4A2TA0A5A2 114 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 FGAP02671 866 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 CCDC152Q4G0S7 254 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 NIP7Q9Y221 180 aaKnown RBP eCLIP16.3■□□□□ 0.2
RTN3-210ENST00000540798 ELP1O95163 1332 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 GPAA1O43292 621 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 FAM98CQ17RN3 349 aaKnown RBP16.3■□□□□ 0.2
RTN3-210ENST00000540798 ZNF274Q96GC6 653 aaPredicted RBP16.3■□□□□ 0.2
RTN3-210ENST00000540798 LRRC2Q9BYS8 371 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 SEC31BQ9NQW1 1179 aa16.3■□□□□ 0.2
RTN3-210ENST00000540798 SALL1Q9NSC2 1324 aa16.29■□□□□ 0.2
RTN3-210ENST00000540798 JAK2O60674 1132 aa16.29■□□□□ 0.2
RTN3-210ENST00000540798 CCDC173Q0VFZ6 552 aa16.29■□□□□ 0.2
RTN3-210ENST00000540798 ZNF652Q9Y2D9 606 aa16.29■□□□□ 0.2
RTN3-210ENST00000540798 LY75O60449 1722 aa16.29■□□□□ 0.2
RTN3-210ENST00000540798 WDR19Q8NEZ3 1342 aa16.29■□□□□ 0.2
RTN3-210ENST00000540798 IMMTQ16891 758 aaKnown RBP16.29■□□□□ 0.2
RTN3-210ENST00000540798 CTDNEP1O95476 244 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 SLC5A1P13866 664 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 MB21D2Q8IYB1 491 aaPredicted RBP16.28■□□□□ 0.2
RTN3-210ENST00000540798 NSUN7Q8NE18 718 aaKnown RBP16.28■□□□□ 0.2
RTN3-210ENST00000540798 TAF1LQ8IZX4 1826 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 PHF14O94880 888 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 TIAM2Q8IVF5 1701 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 C4AP0C0L4 1744 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 C4BP0C0L5 1744 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 FIBPO43427 364 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 APOBRQ0VD83 1088 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 CCDC183Q5T5S1 534 aa16.28■□□□□ 0.2
RTN3-210ENST00000540798 A0A0G2JS52 829 aa16.27■□□□□ 0.2
RTN3-210ENST00000540798 SLC9C2Q5TAH2 1124 aa16.27■□□□□ 0.2
RTN3-210ENST00000540798 HELBQ8NG08 1087 aaPredicted RBP16.27■□□□□ 0.2
RTN3-210ENST00000540798 CHD4Q14839 1912 aa16.27■□□□□ 0.2
RTN3-210ENST00000540798 ZMYM6O95789 1325 aa16.27■□□□□ 0.2
RTN3-210ENST00000540798 PDE6AP16499 860 aa16.27■□□□□ 0.19
RTN3-210ENST00000540798 PDIA3P30101 505 aaKnown RBP16.27■□□□□ 0.19
RTN3-210ENST00000540798 SPATA5Q8NB90 893 aa16.27■□□□□ 0.19
RTN3-210ENST00000540798 MPHOSPH8Q99549 860 aa16.27■□□□□ 0.19
RTN3-210ENST00000540798 SBF2Q86WG5 1849 aa16.26■□□□□ 0.19
RTN3-210ENST00000540798 RESTQ13127 1097 aa16.26■□□□□ 0.19
RTN3-210ENST00000540798 NBPF3Q9H094 633 aa16.26■□□□□ 0.19
RTN3-210ENST00000540798 KRT85P78386 507 aa16.26■□□□□ 0.19
RTN3-210ENST00000540798 ZNF532Q9HCE3 1301 aa16.26■□□□□ 0.19
RTN3-210ENST00000540798 LETM1O95202 739 aaPredicted RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 RASGRF1Q13972 1273 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 RC3H1Q5TC82 1133 aaKnown RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 TTC6Q86TZ1 520 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 PDLIM2Q96JY6 352 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 FAM177BA6PVY3 158 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 IGHMBP2P38935 993 aaKnown RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 HMGN5P82970 282 aaKnown RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 SF3B3Q15393 1217 aaKnown RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 C8orf37Q96NL8 207 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 RRAGDQ9NQL2 400 aaPredicted RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 WWC3Q9ULE0 1092 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 TAF1P21675 1872 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 ANTXR2P58335 489 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 FGD1P98174 961 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 ALX1Q15699 326 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 NAA16Q6N069 864 aaPredicted RBP16.25■□□□□ 0.19
RTN3-210ENST00000540798 CHMP4CQ96CF2 233 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 NGLY1Q96IV0 654 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 TSPY26PQ9H489 355 aa16.25■□□□□ 0.19
RTN3-210ENST00000540798 FERMT3Q86UX7 667 aa16.24■□□□□ 0.19
RTN3-210ENST00000540798 MCM5P33992 734 aa16.24■□□□□ 0.19
RTN3-210ENST00000540798 SLC10A5Q5PT55 438 aa16.24■□□□□ 0.19
RTN3-210ENST00000540798 NCOA7Q8NI08 942 aa16.24■□□□□ 0.19
RTN3-210ENST00000540798 ZSCAN16Q9H4T2 348 aaPredicted RBP16.24■□□□□ 0.19
RTN3-210ENST00000540798 BCL2L12Q9HB09 334 aa16.24■□□□□ 0.19
RTN3-210ENST00000540798 PTPDC1A2A3K4 754 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 ZNF213O14771 459 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 HAND2P61296 217 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 STRBPQ96SI9 672 aaKnown RBP16.23■□□□□ 0.19
RTN3-210ENST00000540798 IDH1O75874 414 aaKnown RBP16.23■□□□□ 0.19
RTN3-210ENST00000540798 CHRNDQ07001 517 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 HSP90AA2PQ14568 343 aaPredicted RBP16.23■□□□□ 0.19
RTN3-210ENST00000540798 SPATA31A6Q5VVP1 1343 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 CHST3Q7LGC8 479 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 SCAND2PQ9GZW5 306 aaPredicted RBP16.23■□□□□ 0.19
RTN3-210ENST00000540798 ZNF804BA4D1E1 1349 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 SNAP23O00161 211 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 ERFEQ4G0M1 354 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 PTF1AQ7RTS3 328 aa16.23■□□□□ 0.19
RTN3-210ENST00000540798 PRC1O43663 620 aa16.22■□□□□ 0.19
RTN3-210ENST00000540798 FAM173BQ6P4H8 233 aa16.22■□□□□ 0.19
RTN3-210ENST00000540798 CDC5LQ99459 802 aaKnown RBP16.22■□□□□ 0.19
RTN3-210ENST00000540798 HSPA1LP34931 641 aa16.22■□□□□ 0.19
RTN3-210ENST00000540798 C3orf67Q6ZVT6 689 aa16.22■□□□□ 0.19
RTN3-210ENST00000540798 FUCA2Q9BTY2 467 aa16.22■□□□□ 0.19
RTN3-210ENST00000540798 HPS5Q9UPZ3 1129 aa16.22■□□□□ 0.19
RTN3-210ENST00000540798 PDE4CQ08493 712 aa16.21■□□□□ 0.19
RTN3-210ENST00000540798 ANP32BQ92688 251 aaKnown RBP16.21■□□□□ 0.19
RTN3-210ENST00000540798 DDX11Q96FC9 970 aa16.21■□□□□ 0.19
RTN3-210ENST00000540798 RPS6KA4O75676 772 aa16.21■□□□□ 0.19
RTN3-210ENST00000540798 TBC1D10CQ8IV04 446 aa16.21■□□□□ 0.19
RTN3-210ENST00000540798 FAM184AQ8NB25 1140 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms